Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: damaged DNA binding

Term: GO:0003684  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene131586 SustainPine v3.0 420
• AutoFact: Calcium-transporting ATPase 1 n=1 Tax=Ceratopteris richardii RepID=Q7XBH9_CERRI 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 2.548e-38
Putative N-terminus
sp_v3.0_unigene132437 SustainPine v3.0 419
• AutoFact: Cation-transporting atpase plant, putative n=1 Tax=Ricinus communis RepID=B9RWZ4_RICCO 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 9.528e-40
Internal
sp_v3.0_unigene142319 SustainPine v3.0 931
• AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9HAW9_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 6.982e-40
N-terminus
sp_v3.0_unigene143613 SustainPine v3.0 491
• AutoFact: Autoinhibited calcium ATPase n=2 Tax=Populus trichocarpa RepID=B9HK60_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 1.387e-39
Internal
sp_v3.0_unigene143655 SustainPine v3.0 195
• AutoFact: Predicted protein n=2 Tax=Hordeum vulgare RepID=F2E6C9_HORVD 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 1.523e-37
Internal
sp_v3.0_unigene149923 SustainPine v3.0 115
• AutoFact: DNA excision repair protein ERCC-1 [Arabidopsis thaliana] sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1; Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive 7 gb|AAF27027.1|AC009177_17 putative nucleotide repa 5.0e-09
• FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene152380 SustainPine v3.0 355
• AutoFact: P-type ATPase n=1 Tax=Dictyostelium fasciculatum RepID=F4Q6Z7_9MYCE 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene153665 SustainPine v3.0 461
• AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9H9I2_POPTR 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 4.283e-21
Putative C-terminus
sp_v3.0_unigene156027 SustainPine v3.0 258
• AutoFact: DNA repair protein RAD51 homolog 1 n=16 Tax=Amniota RepID=RAD51_MOUSE 1.0e-30
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 1.491e-11
Internal
sp_v3.0_unigene157049 SustainPine v3.0 418
• AutoFact: PREDICTED: similar to RAD51 homolog isoform 1 n=1 Tax=Ciona intestinalis RepID=UPI000180BB1E 0.0
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 7.079e-12
Internal
sp_v3.0_unigene159400 SustainPine v3.0 474
• AutoFact: PREDICTED: DNA mismatch repair protein Msh6-like n=1 Tax=Anolis carolinensis RepID=UPI000203838B 0.0
• FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: MutS homolog 7 5.347e-08
Internal
sp_v3.0_unigene159408 SustainPine v3.0 183
• AutoFact: Calcium-transporting ATPase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8HM60_CHLRE 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 7.82e-26
Internal
sp_v3.0_unigene162830 SustainPine v3.0 307
• AutoFact: putative DNA-directed polymerase, having alternative splicing products [Oryza sativa Japonica Group] 8.0e-17
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene165177 SustainPine v3.0 152
• AutoFact: Similarity to DNA-damage-inducible protein P n=1 Tax=Arabidopsis thaliana RepID=O48585_ARATH 6.0e-11
• FL-Next: Isoform 3 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Internal
sp_v3.0_unigene166253 SustainPine v3.0 284
• AutoFact: MutS homolog 7 [Triticum aestivum] 1.0e-33
• FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: MutS homolog 7 2.626e-08
Internal
sp_v3.0_unigene166458 SustainPine v3.0 355
• AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 2.0e-38
• FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene167044 SustainPine v3.0 282
• AutoFact: DNA repair protein Rad4 [Medicago truncatula] 3.0e-24
• FL-Next: sp=Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene167140 SustainPine v3.0 307
• AutoFact: DNA mismatch repair protein MutS2-like [Arabidopsis thaliana] 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene167790 SustainPine v3.0 168
• AutoFact: putative DNA mismatch repair protein [Arabidopsis thaliana] 8.0e-09
• FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene174953 SustainPine v3.0 214
• AutoFact: Cuticle_3 multi-domain protein 4.0e-10
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain