Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: damaged DNA binding

Term: GO:0003684  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene100637 SustainPine v3.0 343
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 4.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: 8-oxoguanine DNA glycosylase 4.703e-10
Internal
sp_v3.0_unigene100681 SustainPine v3.0 245
AutoFact: Calcium-transporting ATPase 1, plasma membrane-type n=4 Tax=BEP clade RepID=ACA1_ORYSJ 1.0e-19
FL-Next: sp=Calcium-transporting ATPase 1, plasma membrane-type; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Autoinhibited calcium ATPase 3.586e-13
Internal
sp_v3.0_unigene100684 SustainPine v3.0 227
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: 8-oxoguanine DNA glycosylase 2.032e-09
Internal
sp_v3.0_unigene101085 SustainPine v3.0 276
AutoFact: ATPase, E1-E2 type [Medicago truncatula] 3.0e-36
FL-Next: sp=Calcium-transporting ATPase 9, plasma membrane-type; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Autoinhibited calcium ATPase 3.18403e-41
Internal
sp_v3.0_unigene101260 SustainPine v3.0 418
AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene102706 SustainPine v3.0 536
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 3.0e-34
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene102785 SustainPine v3.0 690
AutoFact: DNA repair protein xp-C / rad4, putative n=1 Tax=Ricinus communis RepID=B9T0Z6_RICCO 7.0e-35
FL-Next: tr=DNA repair protein xp-C / rad4, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene105898 SustainPine v3.0 373
AutoFact: Hcr2-0B n=1 Tax=Solanum lycopersicum RepID=Q9ZTJ9_SOLLC 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene106771 SustainPine v3.0 398
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CarD-like transcriptional regulator family protein, expressed 6.985e-09
Internal
sp_v3.0_unigene106911 SustainPine v3.0 261
AutoFact: DNA polymerase eta subunit [Arabidopsis thaliana] gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana] gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana] gb|AED95154.1| DNA polymerase eta subun 7.0e-24
FL-Next: tr=DNA polymerase eta, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene107549 SustainPine v3.0 322
AutoFact: DNA mismatch repair protein MutS2-like [Arabidopsis thaliana] 3.0e-36
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene109592 SustainPine v3.0 447
AutoFact: polymerase ATREV1-630 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Internal
sp_v3.0_unigene111052 SustainPine v3.0 295
AutoFact: putative helicase [Arabidopsis thaliana] 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CarD-like transcriptional regulator family protein, expressed 4.688e-09
Putative N-terminus
sp_v3.0_unigene111496 SustainPine v3.0 443
AutoFact: putative DNA polymerase [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Internal
sp_v3.0_unigene113022 SustainPine v3.0 272
AutoFact: DNA polymerase kappa subunit [Arabidopsis thaliana] gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana] gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana] 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene121490 SustainPine v3.0 403
AutoFact: DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gb|AAF06041.1|AC009360_6 Contains similarity to gb|D90908 DNA mismatch repair protein MutS2 from Synechocystis sp. and is a member of PF|00488 Muts family of mismatch repair proteins [Arabidopsis th 4.0e-25
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: DNA mismatch repair protein muts2, putative 6.427e-09
Internal
sp_v3.0_unigene122440 SustainPine v3.0 275
AutoFact: DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gb|AAF06041.1|AC009360_6 Contains similarity to gb|D90908 DNA mismatch repair protein MutS2 from Synechocystis sp. and is a member of PF|00488 Muts family of mismatch repair proteins [Arabidopsis th 4.0e-23
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene128313 SustainPine v3.0 882
AutoFact: RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY 0.0
FL-Next: tr=RAD23; Pinus sylvestris var. mongolica. 0.0
Sma3: Uv excision repair protein rad23, putative 2.601e-11
C-terminus
sp_v3.0_unigene129852 SustainPine v3.0 245
AutoFact: putative formamidopyrimidine-DNA glycosylase 1 [Arabidopsis thaliana] 9.0e-24
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: Putative formamidopyrimidine-DNA glycosylase 1 6.195e-09
Internal
sp_v3.0_unigene130626 SustainPine v3.0 487
AutoFact: putative nucleotide repair protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain