Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: damaged DNA binding

Term: GO:0003684  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene68773 SustainPine v3.0 245
AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene69442 SustainPine v3.0 204
AutoFact: DNA repair protein REV1 n=8 Tax=Arabidopsis RepID=A3EWL3_ARATH 2.0e-17
FL-Next: Isoform 6 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Sma3: Deoxycytidyl transferase 2.796e-09
Putative C-terminus
sp_v3.0_unigene69995 SustainPine v3.0 397
AutoFact: Probable DNA repair protein RAD23 n=3 Tax=Oryza sativa RepID=RAD23_ORYSJ 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uv excision repair protein rad23, putative 1.37e-07
C-terminus
sp_v3.0_unigene70490 SustainPine v3.0 434
AutoFact: DNA polymerase IV n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SDT5_ACIJO 0.0
FL-Next: sp=DNA repair protein REV1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene70507 SustainPine v3.0 342
AutoFact: Calcium ATPase n=3 Tax=Papilionoideae RepID=D3YBB1_TRIRP 6.0e-36
FL-Next: sp=Calcium-transporting ATPase 1, plasma membrane-type; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Autoinhibited calcium ATPase 1.61e-21
Internal
sp_v3.0_unigene70918 SustainPine v3.0 427
AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein n=2 Tax=Arabidopsis thaliana RepID=Q0WVW9_ARATH 5.0e-10
FL-Next: tr=ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72566 SustainPine v3.0 285
AutoFact: putative DNA mismatch repair protein [Arabidopsis thaliana] 1.0e-22
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72728 SustainPine v3.0 146
AutoFact: calcium-transporting ATPase 8 [Arabidopsis thaliana] ref|NP_200521.3| calcium-transporting ATPase 8 [Arabidopsis thaliana] sp|Q9LF79.1|ACA8_ARATH RecName: Full=Calcium-transporting ATPase 8, plasma membrane-type; AltName: Full=Ca(2+)-ATPase isoform 8 emb| 4.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 3.492e-29
Internal
sp_v3.0_unigene72821 SustainPine v3.0 143
AutoFact: DNA repair protein Rad4 [Medicago truncatula] 2.0e-05
FL-Next: tr=DNA repair protein xp-C / rad4, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene73003 SustainPine v3.0 230
AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 5.0e-14
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene73904 SustainPine v3.0 454
AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9HAW9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 2.569e-40
N-terminus
sp_v3.0_unigene76550 SustainPine v3.0 229
AutoFact: uv excision repair protein rhp23 [Cryptococcus neoformans var. neoformans JEC21] gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans var. neoformans JEC21] 8.0e-15
FL-Next: tr=RAD23; Pinus sylvestris var. mongolica. 0.0
Internal
sp_v3.0_unigene77591 SustainPine v3.0 193
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 2.0e-11
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene80069 SustainPine v3.0 299
AutoFact: cell cycle checkpoint protein [Arabidopsis thaliana] gb|AAM91646.1| unknown protein [Arabidopsis thaliana] gb|AAR24667.1| At4g17760 [Arabidopsis thaliana] emb|CAE55213.1| Rad1-like protein [Arabidopsis thaliana] dbj|BAD43778.1| unknown protein [Arabidopsi 2.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Rad1-like protein 3.327e-13
Internal
sp_v3.0_unigene85799 SustainPine v3.0 403
AutoFact: PREDICTED: similar to Ca/calmodulin-dependent protein kinase phosphatase-N [Nasonia vitripennis] 6.0e-06
Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 1.276e-12
coding
sp_v3.0_unigene95101 SustainPine v3.0 441
AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Putative C-terminus
sp_v3.0_unigene95195 SustainPine v3.0 886
AutoFact: Umuc-like DNA repair protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E7T2_MICSR 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis (Green alga). 0.0
Sma3: Umuc-like DNA repair protein 4.386e-06
Putative N-terminus
sp_v3.0_unigene95451 SustainPine v3.0 707
AutoFact: calcium-transporting ATPase 8 [Arabidopsis thaliana] ref|NP_200521.3| calcium-transporting ATPase 8 [Arabidopsis thaliana] sp|Q9LF79.1|ACA8_ARATH RecName: Full=Calcium-transporting ATPase 8, plasma membrane-type; AltName: Full=Ca(2+)-ATPase isoform 8 emb| 0.0
FL-Next: sp=Calcium-transporting ATPase 8, plasma membrane-type; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Autoinhibited calcium ATPase 5.72304e-41
Internal
sp_v3.0_unigene99165 SustainPine v3.0 373
AutoFact: Calcium-transporting ATPase 8, plasma membrane-type n=6 Tax=Brassicaceae RepID=ACA8_ARATH 6.0e-36
FL-Next: sp=Calcium-transporting ATPase 8, plasma membrane-type; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Autoinhibited calcium ATPase 2.166e-34
Internal
sp_v3.0_unigene99949 SustainPine v3.0 877
AutoFact: RAD51 homolog [Populus nigra] 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 7.576e-12
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain