Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: damaged DNA binding

Term: GO:0003684  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene18206 SustainPine v3.0 1875
AutoFact: RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY 0.0
FL-Next: tr=RAD23; Pinus sylvestris var. mongolica. 0.0
Sma3: RAD23 0.0
Complete
sp_v3.0_unigene19747 SustainPine v3.0 902
AutoFact: DNA polymerase kappa subunit n=3 Tax=Arabidopsis thaliana RepID=Q6JDV7_ARATH 0.0
FL-Next: Isoform 2 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Sma3: Putative DNA-directed polymerase, having alternative splicing products 2.032e-09
Internal
sp_v3.0_unigene23207 SustainPine v3.0 3890
AutoFact: PREDICTED: similar to ACA1 (autoinhibited Ca2+ -ATPase 1); calmodulin binding isoform 1 n=1 Tax=Vitis vinifera RepID=UPI00015C9686 0.0
FL-Next: sp=Calcium-transporting ATPase 1, plasma membrane-type; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Autoinhibited calcium ATPase 4.23e-40
Complete
sp_v3.0_unigene24284 SustainPine v3.0 3444
AutoFact: DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA mismatch repair protein MSH2 7.997e-09
Complete
sp_v3.0_unigene24521 SustainPine v3.0 524
AutoFact: PREDICTED: similar to DNA repair protein RAD51 homolog A n=1 Tax=Hydra magnipapillata RepID=UPI0001923F2B 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 6.709e-12
Internal
sp_v3.0_unigene27713 SustainPine v3.0 717
AutoFact: RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uv excision repair protein rad23, putative 1.217e-11
N-terminus
sp_v3.0_unigene27869 SustainPine v3.0 933
AutoFact: Ca2+-transporting ATPase [Arabidopsis thaliana] sp|O81108.1|ACA2_ARATH RecName: Full=Calcium-transporting ATPase 2, plasma membrane-type; AltName: Full=Ca(2+)-ATPase isoform 2 gb|AAC26997.1| plasma membrane-type calcium ATPase [Arabidopsis thaliana] emb|C 0.0
FL-Next: sp=Calcium-transporting ATPase 2, plasma membrane-type; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cation-transporting atpase plant, putative 6.23e-14
N-terminus
sp_v3.0_unigene29236 SustainPine v3.0 888
AutoFact: xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] ref|NP_001031894.1| xeroderma pigmentosum group C-complementing protein [Arabidopsis thaliana] gb|AAL32833.1| Unknown protein [Arabidopsis thaliana] gb|AAQ56802.1| At5g16630 [Arabi 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene30773 SustainPine v3.0 1127
AutoFact: cell cycle checkpoint protein [Arabidopsis thaliana] gb|AEE83947.1| cell cycle checkpoint protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Rad1-like protein 7.788e-18
C-terminus
sp_v3.0_unigene34928 SustainPine v3.0 1127
AutoFact: RAD23-like n=2 Tax=Solanum tuberosum RepID=Q38JH6_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uv excision repair protein rad23, putative 2.64e-11
N-terminus
sp_v3.0_unigene35389 SustainPine v3.0 882
AutoFact: RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair protein RAD23 1.078e-13
C-terminus
sp_v3.0_unigene37159 SustainPine v3.0 185
AutoFact: cell cycle checkpoint protein [Arabidopsis thaliana] gb|AAM91646.1| unknown protein [Arabidopsis thaliana] gb|AAR24667.1| At4g17760 [Arabidopsis thaliana] emb|CAE55213.1| Rad1-like protein [Arabidopsis thaliana] dbj|BAD43778.1| unknown protein [Arabidopsi 3.0e-08
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Rad1-like protein 1.667e-09
Putative N-terminus
sp_v3.0_unigene37550 SustainPine v3.0 518
AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9IHW7_POPTR 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: P-type ATPase 1.668e-13
C-terminus
sp_v3.0_unigene37774 SustainPine v3.0 2133
AutoFact: Plasma membrane Ca2+-ATPase n=2 Tax=Papilionoideae RepID=Q9FVE8_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 1.168e-39
Putative Complete
sp_v3.0_unigene37874 SustainPine v3.0 1955
AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9HAW9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 4.77843e-43
Complete
sp_v3.0_unigene38875 SustainPine v3.0 436
AutoFact: DNA repair protein Rad4 [Medicago truncatula] 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene40693 SustainPine v3.0 566
AutoFact: DNA polymerase kappa subunit [Arabidopsis thaliana] gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana] gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana] 0.0
FL-Next: Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Sma3: Putative DNA-directed polymerase, having alternative splicing products 1.945e-09
Internal
sp_v3.0_unigene42369 SustainPine v3.0 901
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene43353 SustainPine v3.0 141
AutoFact: putative helicase [Arabidopsis thaliana] 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene44245 SustainPine v3.0 809
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain