Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene156295 SustainPine v3.0 233
• AutoFact: Ribosomal protein L7Ae n=1 Tax=Cicindela littoralis RepID=Q4GXM0_CICLT 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a 4.958e-08
Putative N-terminus
sp_v3.0_unigene156317 SustainPine v3.0 221
• AutoFact: ribosomal protein L7a [Xenopus (Silurana) tropicalis] gb|AAI18909.1| hypothetical protein LOC447981 [Xenopus (Silurana) tropicalis] 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 9.643e-09
Internal
sp_v3.0_unigene156361 SustainPine v3.0 330
• AutoFact: 60S ribosomal protein L8 (L7A) (L4) n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=E6RE46_CRYGW 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 9.835e-09
Internal
sp_v3.0_unigene156558 SustainPine v3.0 407
• AutoFact: 60S ribosomal protein L7a, putative n=3 Tax=Onchocercidae RepID=A8P4H1_BRUMA 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 8.71e-09
C-terminus
sp_v3.0_unigene156927 SustainPine v3.0 352
• AutoFact: 60S acidic ribosomal protein P0 n=3 Tax=Ajellomyces dermatitidis RepID=C5GCV5_AJEDR 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 8.379e-09
Putative N-terminus
sp_v3.0_unigene156933 SustainPine v3.0 516
• AutoFact: pre-rRNA-processing protein TSR1 2.99878e-43
• FL-Next: tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga). 0.0
C-terminus
sp_v3.0_unigene157848 SustainPine v3.0 462
• AutoFact: 60S acidic ribosomal protein P0 n=14 Tax=Schizophora RepID=RLA0_DROME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 3.156e-19
Internal
sp_v3.0_unigene157924 SustainPine v3.0 373
• AutoFact: 60S ribosomal protein L7a, putative n=3 Tax=Onchocercidae RepID=A8P4H1_BRUMA 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 8.439e-09
N-terminus
sp_v3.0_unigene157939 SustainPine v3.0 268
• AutoFact: snRNP subunit [Cryptococcus neoformans var. neoformans JEC21] ref|XP_774347.1| hypothetical protein CNBG3280 [Cryptococcus neoformans var. neoformans B-3501A] ref|XP_003195312.1| snRNP subunit [Cryptococcus gattii WM276] sp|P0CQ53.1|SNU13_CRYNB RecName: F 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.9e-08
C-terminus
sp_v3.0_unigene158211 SustainPine v3.0 351
• AutoFact: PREDICTED: similar to ribosomal protein P0-like protein n=1 Tax=Hydra magnipapillata RepID=UPI00019263C7 5.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene158398 SustainPine v3.0 348
• AutoFact: snRNP and snoRNP protein (Snu13), putative [Aspergillus clavatus NRRL 1] gb|EAW13811.1| snRNP and snoRNP protein (Snu13), putative [Aspergillus clavatus NRRL 1] 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.447e-08
N-terminus
sp_v3.0_unigene158480 SustainPine v3.0 361
• AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NVM9_PHYIT 7.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 3.156e-19
Internal
sp_v3.0_unigene158704 SustainPine v3.0 264
• AutoFact: Ribosomal protein L7a n=1 Tax=Ixodes pacificus RepID=Q6B897_9ACAR 7.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene158867 SustainPine v3.0 203
• AutoFact: 60S ribosomal protein L7a-2 [Arabidopsis thaliana] sp|Q9LZH9.1|RL7A2_ARATH RecName: Full=60S ribosomal protein L7a-2 emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A protein [Arabidopsis thaliana] gb|AAK97734.1| AT3g62870/F26K9_300 [Arabidopsis thaliana] gb|AAL3 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 6.823e-09
Internal
sp_v3.0_unigene158881 SustainPine v3.0 376
• AutoFact: Nucleolar protein NOP5 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NBZ5_PHYIT 3.0e-38
• FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein nop56, putative 1.141e-11
Internal
sp_v3.0_unigene162785 SustainPine v3.0 138
• AutoFact: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] gb|AAK32786.1|AF361618_1 AT4g12600/T1P17_190 [Arabidopsis thaliana] emb|CAB53753.1| Ribosomal protein L7Ae-like [Arabidopsis thaliana] emb|CAB78303.1| Ribosomal protein L7Ae-lik 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.399e-08
Internal
sp_v3.0_unigene163823 SustainPine v3.0 327
• AutoFact: Retrotransposon protein, putative, unclassified n=4 Tax=Oryza sativa RepID=Q10I89_ORYSJ 3.0e-21
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene164018 SustainPine v3.0 280
• AutoFact: [J] COG2075 Ribosomal protein L24E 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene164617 SustainPine v3.0 271
• AutoFact: 60S acidic ribosomal protein P0-1 [Arabidopsis thaliana] sp|O04204.1|RLA01_ARATH RecName: Full=60S acidic ribosomal protein P0-1 gb|AAB95286.1| 60S acidic ribosomal protein P0 [Arabidopsis thaliana] gb|AAN71918.1| putative 60S acidic ribosomal protein P0 2.0e-09
• FL-Next: sp=60S acidic ribosomal protein P0-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene164673 SustainPine v3.0 180
• AutoFact: 60S ribosomal protein L7a [Danio rerio] gb|AAH59533.1| Ribosomal protein L7a [Danio rerio] gb|AAH71352.1| Ribosomal protein L7a [Danio rerio] emb|CAN88769.1| ribosomal protein L7a [Danio rerio] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 9.264e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain