Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene150413 SustainPine v3.0 436
AutoFact: Pre-rRNA-processing protein TSR1 n=1 Tax=Ascaris suum RepID=F1KT99_ASCSU 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene150431 SustainPine v3.0 392
AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 2.9e-08
Putative Complete
sp_v3.0_unigene150690 SustainPine v3.0 425
AutoFact: Ribosomal protein LP0-like protein (Fragment) n=1 Tax=Epinephelus coioides RepID=B5T1M1_EPICO 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 2.788e-19
Internal
sp_v3.0_unigene150738 SustainPine v3.0 500
AutoFact: Putative 60S ribosomal protein L7a n=3 Tax=Leishmania RepID=A4HT77_LEIIN 2.94273e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene150757 SustainPine v3.0 184
AutoFact: NHP2-like protein 1 homolog n=3 Tax=Caenorhabditis RepID=NH2L1_CAEEL 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 2.9e-08
C-terminus
sp_v3.0_unigene151192 SustainPine v3.0 403
AutoFact: ribosomal protein L7 [Hyacinthus orientalis] 4.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr13 scaffold_17, whole genome shotgun sequence 0.0
Putative Complete
sp_v3.0_unigene151199 SustainPine v3.0 376
AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 3.279e-08
Putative Complete
sp_v3.0_unigene151372 SustainPine v3.0 413
AutoFact: 60S ribosomal protein L7A-like [Solanum tuberosum] 5.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.467e-08
C-terminus
sp_v3.0_unigene151450 SustainPine v3.0 315
AutoFact: ribosomal protein L7A [Bigelowiella natans] 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.251e-08
Internal
sp_v3.0_unigene151585 SustainPine v3.0 397
AutoFact: Ribosomal protein L7a n=1 Tax=Pfiesteria piscicida RepID=E8Z674_PFIPI 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene151661 SustainPine v3.0 401
AutoFact: Ribosomal protein L7Ae/L30e/S12e/Gadd4, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P0D1_PHYIT 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene152032 SustainPine v3.0 378
AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 6.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 4.296e-08
N-terminus
sp_v3.0_unigene152034 SustainPine v3.0 525
AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_1 n=1 Tax=Blastocystis hominis RepID=D8LXA9_BLAHO 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene152401 SustainPine v3.0 413
AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.49e-08
Putative C-terminus
sp_v3.0_unigene152461 SustainPine v3.0 457
AutoFact: H/aca ribonucleoprotein complex subunit 2-like protein n=2 Tax=Ictalurus RepID=E3TC44_9TELE 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Os06g0274200 protein 9.747e-06
C-terminus
sp_v3.0_unigene152853 SustainPine v3.0 333
AutoFact: Ribosomal protein L10 n=1 Tax=Elaeis guineensis RepID=B3TLL9_ELAGV 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene153033 SustainPine v3.0 124
AutoFact: NHP2/L7aE family protein [Neurospora crassa OR74A] ref|XP_003348176.1| hypothetical protein SMAC_04021 [Sordaria macrospora k-hell] emb|CAC18221.2| probable 13 kD U4/U6.U5 snRNP associate protein [Neurospora crassa] gb|EAA32181.1| NHP2/L7aE family protein 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 2.9e-08
Internal
sp_v3.0_unigene153069 SustainPine v3.0 306
AutoFact: ribosomal protein L7Ae [Dictyostelium discoideum AX4] gb|EAL62561.1| ribosomal protein L7Ae [Dictyostelium discoideum AX4] 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene153244 SustainPine v3.0 337
AutoFact: putative nucleolar protein [Arabidopsis thaliana] 4.0e-35
FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nucleolar protein nop56, putative 9.733e-12
Internal
sp_v3.0_unigene153269 SustainPine v3.0 286
AutoFact: PREDICTED: similar to hoip-prov protein [Strongylocentrotus purpuratus] ref|XP_001176138.1| PREDICTED: similar to hoip-prov protein [Strongylocentrotus purpuratus] 9.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 2.9e-08
Putative C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain