Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribosome biogenesis

Term: GO:0042254  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1943 SustainPine v3.0 2051
AutoFact: MAR-binding protein [Nicotiana tabacum] 0.0
FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nucleolar protein nop56, putative 1.106e-11
N-terminus
sp_v3.0_unigene2461 SustainPine v3.0 1288
AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: cDNA clone:J023087N22, full insert sequence 0.0
Complete
sp_v3.0_unigene2465 SustainPine v3.0 1573
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene2934 SustainPine v3.0 1616
AutoFact: putative rRNA-processing protein EBP2-like protein [Arabidopsis thaliana] sp|Q9LUJ5.1|EBP2_ARATH RecName: Full=Probable rRNA-processing protein EBP2 homolog dbj|BAB01241.1| nucleolar protein-like [Arabidopsis thaliana] gb|AAL24270.1| AT3g22660/MWI23_3 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene8003 SustainPine v3.0 1882
AutoFact: putative rRNA-processing protein EBP2-like protein [Arabidopsis thaliana] sp|Q9LUJ5.1|EBP2_ARATH RecName: Full=Probable rRNA-processing protein EBP2 homolog dbj|BAB01241.1| nucleolar protein-like [Arabidopsis thaliana] gb|AAL24270.1| AT3g22660/MWI23_3 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene8467 SustainPine v3.0 2839
AutoFact: homolog of nucleolar protein NOP56 [Arabidopsis thaliana] gb|AAF02835.1|AC009894_6 nucleolar protein [Arabidopsis thaliana] gb|AAG40838.1|AF302492_1 NOP56-like protein [Arabidopsis thaliana] gb|AAK62596.1| At1g56110/T6H22_9 [Arabidopsis thaliana] gb|AAM26 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleolar protein 1.728e-10
Complete
sp_v3.0_unigene11235 SustainPine v3.0 1213
AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene12444 SustainPine v3.0 2345
AutoFact: DUF663 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene15297 SustainPine v3.0 158
AutoFact: 60S ribosomal protein L7A n=6 Tax=Ajellomyces RepID=C0NHA4_AJECG 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene17196 SustainPine v3.0 1482
AutoFact: 60S ribosomal protein L7a n=11 Tax=Poaceae RepID=RL7A_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.538e-08
Complete
sp_v3.0_unigene17511 SustainPine v3.0 1273
AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene17546 SustainPine v3.0 1171
AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene17950 SustainPine v3.0 718
AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 5.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.106e-08
C-terminus
sp_v3.0_unigene18105 SustainPine v3.0 1486
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 8.661e-19
Complete
sp_v3.0_unigene18431 SustainPine v3.0 1621
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 8.661e-19
Complete
sp_v3.0_unigene20319 SustainPine v3.0 1316
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 7.168e-19
Complete
sp_v3.0_unigene20379 SustainPine v3.0 1184
AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 7.00649e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene21843 SustainPine v3.0 625
AutoFact: Nucleolar protein Nop56 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W2L1_9STRA 0.0
FL-Next: sp=Probable nucleolar protein 5-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nucleolar protein 7.218e-14
Internal
sp_v3.0_unigene23717 SustainPine v3.0 2417
AutoFact: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleolar protein nop56, putative 7.767e-12
Complete
sp_v3.0_unigene23761 SustainPine v3.0 4587
AutoFact: Ribosome biogenesis protein bms1, putative n=1 Tax=Pediculus humanus corporis RepID=E0VLA3_PEDHC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosome biogenesis protein bms1, putative 2.166e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain