Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene86 SustainPine v3.0 2927
• AutoFact: U3-55K-like protein 2 [Arabidopsis thaliana] gb|AAY21208.1| U3-55K-like protein 2 [Arabidopsis thaliana] gb|AEE84406.1| U3-55K-like protein 2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U3 snoRNP-associated-like protein 5.308e-09
Complete
sp_v3.0_unigene108 SustainPine v3.0 3024
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative ATP-dependent RNA helicase 1.657e-06
Putative Complete
sp_v3.0_unigene195 SustainPine v3.0 3806
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 8.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene319 SustainPine v3.0 2656
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thalia 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g44720 5.669e-09
Complete
sp_v3.0_unigene496 SustainPine v3.0 3131
• AutoFact: putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene794 SustainPine v3.0 2511
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-binding region-containing protein, putative 5.489e-11
Complete
sp_v3.0_unigene1066 SustainPine v3.0 902
• AutoFact: Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] gb|AEE84034.1| Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] 8.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1330 SustainPine v3.0 3282
• AutoFact: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis thaliana] sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776 gb|AAB84332.1| putative small nuclear 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1503 SustainPine v3.0 1488
• AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
C-terminus
sp_v3.0_unigene1533 SustainPine v3.0 579
• AutoFact: GRP multi-domain protein 3.0e-07
coding
sp_v3.0_unigene1703 SustainPine v3.0 1178
• AutoFact: Putative Putative Pepidyl-tRNA hydrolase family protein [Brassica oleracea] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-tRNA hydrolase, putative 8.518e-12
Complete
sp_v3.0_unigene1707 SustainPine v3.0 1286
• AutoFact: Sex determining protein n=3 Tax=Mus musculus musculus RepID=O35861_MOUSE 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 3.394e-17
Complete
sp_v3.0_unigene1796 SustainPine v3.0 1187
• AutoFact: U1 snRNP-interacting 70 kDa protein [Triticum aestivum] 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 5.633e-12
Complete
sp_v3.0_unigene1868 SustainPine v3.0 2576
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: U1 snRNP 3.506e-09
Complete
sp_v3.0_unigene1869 SustainPine v3.0 2047
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 snRNP 9.17e-09
Putative Complete
sp_v3.0_unigene1943 SustainPine v3.0 2051
• AutoFact: MAR-binding protein [Nicotiana tabacum] 0.0
• FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein nop56, putative 1.106e-11
N-terminus
sp_v3.0_unigene2231 SustainPine v3.0 1613
• AutoFact: U1snRNP-specific protein, U1A n=1 Tax=Solanum tuberosum RepID=Q41498_SOLTU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Spliceosomal protein 6.743e-09
Complete
sp_v3.0_unigene2461 SustainPine v3.0 1288
• AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: cDNA clone:J023087N22, full insert sequence 0.0
Complete
sp_v3.0_unigene2579 SustainPine v3.0 2564
• AutoFact: U3 small nucleolar ribonucleoprotein protein mpp10, putative n=1 Tax=Ricinus communis RepID=B9RB06_RICCO 0.0
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene2802 SustainPine v3.0 1791
• AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 1.89e-13
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain