Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene63668 SustainPine v3.0 235
AutoFact: [J] COG5384 U3 small nucleolar ribonucleoprotein component 2.0e-09
FL-Next: tr=U3 small nucleolar ribonucleoprotein protein mpp10, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene64716 SustainPine v3.0 239
AutoFact: CRS2-associated factor 2 [Arabidopsis thaliana] sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAF79596.1|AC007 8.0e-22
FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.336e-12
Internal
sp_v3.0_unigene65700 SustainPine v3.0 254
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9RS49_RICCO 9.0e-20
FL-Next: tr=Lupus la ribonucleoprotein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene66075 SustainPine v3.0 484
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene66815 SustainPine v3.0 243
AutoFact: putative Sm protein F [Oryza sativa Japonica Group] dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group] 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene66884 SustainPine v3.0 137
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene67987 SustainPine v3.0 199
AutoFact: putative ribosomal-like protein [Atropa belladonna] 6.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene68648 SustainPine v3.0 239
AutoFact: putative nucleic acid-binding protein [Oryza sativa Japonica Group] gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group] dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group] 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 8.677e-15
Putative C-terminus
sp_v3.0_unigene69203 SustainPine v3.0 278
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.0e-32
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene70069 SustainPine v3.0 270
AutoFact: small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis 6.0e-12
FL-Next: sp=Small nuclear ribonucleoprotein-associated protein; Vitis vinifera (Grape). 0.0
Sma3: Putative snRNP protein 4.39e-09
Internal
sp_v3.0_unigene70158 SustainPine v3.0 302
AutoFact: U3-55K-like protein 2 [Arabidopsis thaliana] gb|AAY21208.1| U3-55K-like protein 2 [Arabidopsis thaliana] gb|AEE84406.1| U3-55K-like protein 2 [Arabidopsis thaliana] 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene70216 SustainPine v3.0 278
AutoFact: ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RHS6_SELML 2.0e-13
FL-Next: sp=ABC transporter G family member 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: White-brown-complex ABC transporter family 9.628e-27
Internal
sp_v3.0_unigene70549 SustainPine v3.0 242
AutoFact: nucleic acid-binding protein-like [Oryza sativa Japonica Group] 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 9.835e-14
Putative C-terminus
sp_v3.0_unigene71709 SustainPine v3.0 168
AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SSS5_RICCO 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 3.393e-16
Internal
sp_v3.0_unigene71985 SustainPine v3.0 365
AutoFact: small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis thaliana] gb|AAL47458.1| AT3g075 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein Sm D1 3.526e-08
Complete
sp_v3.0_unigene72258 SustainPine v3.0 209
AutoFact: centromere/microtubule binding protein cbf5 [Cryptococcus neoformans var. neoformans JEC21] ref|XP_775935.1| hypothetical protein CNBD3420 [Cryptococcus neoformans var. neoformans B-3501A] gb|EAL21288.1| hypothetical protein CNBD3420 [Cryptococcus neoform 4.0e-09
FL-Next: sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72543 SustainPine v3.0 222
AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene73469 SustainPine v3.0 379
AutoFact: [J] COG0103 Ribosomal protein S9 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S16 6.53e-32
N-terminus
sp_v3.0_unigene73731 SustainPine v3.0 530
AutoFact: Unassigned protein
FL-Next: Isoform Short of U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 0.0
N-terminus
sp_v3.0_unigene73913 SustainPine v3.0 284
AutoFact: 60S ribosomal protein L7A n=6 Tax=Ajellomyces RepID=C0NHA4_AJECG 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.003e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain