Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene44626 SustainPine v3.0 294
• AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 1.0e-34
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
• Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.483e-12
Internal
sp_v3.0_unigene48048 SustainPine v3.0 491
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
• FL-Next: tr=U520, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene48227 SustainPine v3.0 225
• AutoFact: CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36264.1| unknown protein [Arabidopsis thaliana] gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis 1.0e-21
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
• Sma3: Protein CHLOROPLAST RNA SPLICING 1 7.691e-13
Internal
sp_v3.0_unigene49792 SustainPine v3.0 652
• AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.681e-12
Putative C-terminus
sp_v3.0_unigene50443 SustainPine v3.0 188
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 9.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene51451 SustainPine v3.0 699
• AutoFact: Ribosomal protein L7A (Fragment) n=1 Tax=Bigelowiella natans RepID=Q3SAE2_BIGNA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.295e-08
N-terminus
sp_v3.0_unigene51833 SustainPine v3.0 236
• AutoFact: Unassigned protein
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene51977 SustainPine v3.0 301
• AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 4.0e-13
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene52104 SustainPine v3.0 409
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 2.0e-25
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene52533 SustainPine v3.0 394
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein polypeptide G 5.391e-13
Putative Complete
sp_v3.0_unigene52737 SustainPine v3.0 161
• AutoFact: 60S ribosomal protein L7a-2 [Arabidopsis thaliana] sp|Q9LZH9.1|RL7A2_ARATH RecName: Full=60S ribosomal protein L7a-2 emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A protein [Arabidopsis thaliana] gb|AAK97734.1| AT3g62870/F26K9_300 [Arabidopsis thaliana] gb|AAL3 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 5.967e-09
Internal
sp_v3.0_unigene53236 SustainPine v3.0 353
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized protein At3g06530; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene54695 SustainPine v3.0 215
• AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein, putative 1.803e-08
Putative N-terminus
sp_v3.0_unigene54776 SustainPine v3.0 331
• AutoFact: Sm snRNP core protein Smf1 n=1 Tax=Coccidioides posadasii str. Silveira RepID=E9D5W6_COCPS 4.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 6.229e-09
Complete
sp_v3.0_unigene55058 SustainPine v3.0 349
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene57096 SustainPine v3.0 120
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_19.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TMM1_VITVI 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene57391 SustainPine v3.0 255
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene57422 SustainPine v3.0 430
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized protein At3g06530; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Uncharacterized protein At3g06530 9.747e-06
N-terminus
sp_v3.0_unigene57833 SustainPine v3.0 233
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.0e-27
• FL-Next: tr=At1g20960/F9H16_5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene60696 SustainPine v3.0 371
• AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain