Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene34821 SustainPine v3.0 1815
AutoFact: MAR-binding protein [Nicotiana tabacum] 0.0
FL-Next: sp=Probable nucleolar protein 5-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nucleolar protein nop56, putative 1.366e-11
N-terminus
sp_v3.0_unigene34901 SustainPine v3.0 436
AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 2.94273e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.42e-08
C-terminus
sp_v3.0_unigene35523 SustainPine v3.0 1000
AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene35645 SustainPine v3.0 1653
AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding region-containing protein, putative 4.305e-15
Putative Complete
sp_v3.0_unigene35884 SustainPine v3.0 655
AutoFact: LSM domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3QWF0_COLGM 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene35894 SustainPine v3.0 683
AutoFact: 60S ribosomal protein L7a-2 [Arabidopsis thaliana] sp|Q9LZH9.1|RL7A2_ARATH RecName: Full=60S ribosomal protein L7a-2 emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A protein [Arabidopsis thaliana] gb|AAK97734.1| AT3g62870/F26K9_300 [Arabidopsis thaliana] gb|AAL3 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.144e-08
C-terminus
sp_v3.0_unigene35910 SustainPine v3.0 598
AutoFact: LA RNA-binding protein n=5 Tax=Arabidopsis RepID=F4K704_ARATH 3.9937e-43
FL-Next: tr=AT5g21160/T10F18_190; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene36603 SustainPine v3.0 657
AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 1.362e-08
Putative C-terminus
sp_v3.0_unigene37571 SustainPine v3.0 785
AutoFact: U3-55K-like protein 2 [Arabidopsis thaliana] gb|AAY21208.1| U3-55K-like protein 2 [Arabidopsis thaliana] gb|AEE84406.1| U3-55K-like protein 2 [Arabidopsis thaliana] 5.0e-39
FL-Next: sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: U3 snoRNP-associated-like protein 4.107e-09
Internal
sp_v3.0_unigene37694 SustainPine v3.0 661
AutoFact: U1 snRNP-interacting 70 kDa protein [Triticum aestivum] 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U1 small nuclear ribonucleoprotein 4.913e-13
N-terminus
sp_v3.0_unigene37817 SustainPine v3.0 1984
AutoFact: RNA-binding protein, putative [Musa acuminata] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 2.884e-15
Complete
sp_v3.0_unigene37819 SustainPine v3.0 1889
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative ribonucleoprotein 2.323e-11
Complete
sp_v3.0_unigene37823 SustainPine v3.0 3023
AutoFact: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleolar protein 2.839e-10
Complete
sp_v3.0_unigene37837 SustainPine v3.0 1255
AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene37907 SustainPine v3.0 1519
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein, putative, expressed 3.335e-09
Complete
sp_v3.0_unigene40682 SustainPine v3.0 1533
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene41518 SustainPine v3.0 379
AutoFact: putative Sec63 domain containing protein [Oryza sativa Japonica Group] gb|ABF98818.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative [Oryza sativa Japonica Group] 2.0e-39
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene42555 SustainPine v3.0 808
AutoFact: CRS1_YhbY domain containing protein 3.0e-15
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 2.278e-12
Internal
sp_v3.0_unigene42805 SustainPine v3.0 318
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized protein At3g06530; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene43028 SustainPine v3.0 2067
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative ribonucleoprotein 2.323e-11
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain