Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene21843 SustainPine v3.0 625
• AutoFact: Nucleolar protein Nop56 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W2L1_9STRA 0.0
• FL-Next: sp=Probable nucleolar protein 5-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nucleolar protein 7.218e-14
Internal
sp_v3.0_unigene21979 SustainPine v3.0 188
• AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 9.0e-19
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1 1.67e-13
Internal
sp_v3.0_unigene22089 SustainPine v3.0 426
• AutoFact: CRS1_YhbY domain containing protein 1.0e-06
• FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1 1.183e-12
Internal
sp_v3.0_unigene22614 SustainPine v3.0 881
• AutoFact: GRP multi-domain protein 2.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene22664 SustainPine v3.0 3689
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA binding protein, putative 8.306e-06
Putative Complete
sp_v3.0_unigene23717 SustainPine v3.0 2417
• AutoFact: Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleolar protein nop56, putative 7.767e-12
Complete
sp_v3.0_unigene24099 SustainPine v3.0 588
• AutoFact: 60S ribosomal protein L7a-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXP8_PHYIT 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.317e-08
C-terminus
sp_v3.0_unigene24445 SustainPine v3.0 487
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein, putative 1.616e-09
Putative N-terminus
sp_v3.0_unigene24710 SustainPine v3.0 484
• AutoFact: LSM domain-containing protein [Dictyostelium discoideum AX4] gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4] 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein, putative 1.041e-12
Complete
sp_v3.0_unigene24891 SustainPine v3.0 423
• AutoFact: Putative glycine-rich RNA-binding protein 2 n=1 Tax=Bambusa oldhamii RepID=B5KLZ7_BAMOL 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 7.67e-26
N-terminus
sp_v3.0_unigene25442 SustainPine v3.0 841
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.99993e-41
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene25659 SustainPine v3.0 887
• AutoFact: 60S ribosomal protein L7a n=51 Tax=Coelomata RepID=RL7A_TAKRU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.144e-08
Complete
sp_v3.0_unigene25662 SustainPine v3.0 420
• AutoFact: U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Xenopus laevis RepID=U1SBP_XENLA 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative U1 small nuclear ribonucleoprotein 70 kDa 1.964e-09
Putative Complete
sp_v3.0_unigene25752 SustainPine v3.0 485
• AutoFact: small nuclear ribonucleoprotein Sm D3 [Homo sapiens] ref|NP_080371.1| small nuclear ribonucleoprotein Sm D3 [Mus musculus] ref|NP_001007839.1| small nuclear ribonucleoprotein Sm D3 [Gallus gallus] ref|NP_001017093.1| small nuclear ribonucleoprotein D3 pol 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein, putative 6.504e-13
Putative Complete
sp_v3.0_unigene25823 SustainPine v3.0 519
• AutoFact: U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] ref|NP_001031238.1| U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] gb|AAL50104.1| At1g65700/F1E22_3 [Arabidopsis thaliana] gb|AAM16215.1| At1g65700/F1E22_3 [Arabidopsis thali 6.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene25827 SustainPine v3.0 475
• AutoFact: 13 kDa ribonucleoprotein-associated protein n=2 Tax=Oomycetes RepID=D0NZI7_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.86e-08
Complete
sp_v3.0_unigene25838 SustainPine v3.0 582
• AutoFact: PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like isoform 1 [Apis mellifera] 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Complete
sp_v3.0_unigene25983 SustainPine v3.0 484
• AutoFact: 60S ribosomal protein L7a [Neosartorya fischeri NRRL 181] gb|EAW16542.1| 60S ribosomal protein L7a [Neosartorya fischeri NRRL 181] 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.083e-08
C-terminus
sp_v3.0_unigene26058 SustainPine v3.0 412
• AutoFact: rRNA 2'Omethyltransferase fibrillarin putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WG01_9STRA 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin 2.751e-08
C-terminus
sp_v3.0_unigene26278 SustainPine v3.0 586
• AutoFact: 60S ribosomal protein L7a-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXP8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.514e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain