Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene165662 SustainPine v3.0 507
• AutoFact: small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea okayama7#130] gb|EAU91789.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea okayama7#130] 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein, putative 9.935e-09
Putative Complete
sp_v3.0_unigene165766 SustainPine v3.0 437
• AutoFact: Small nuclear ribonucleoprotein Sm D3 n=4 Tax=leotiomyceta RepID=B2W6T3_PYRTR 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein, putative 5.671e-13
Putative Complete
sp_v3.0_unigene166042 SustainPine v3.0 351
• AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
N-terminus
sp_v3.0_unigene166232 SustainPine v3.0 438
• AutoFact: U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] 3.00018e-42
• FL-Next: tr=Activating signal cointegrator 1 complex subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene166506 SustainPine v3.0 288
• AutoFact: 50S ribosomal protein L7Ae n=3 Tax=Pleosporineae RepID=B2WJB2_PYRTR 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.399e-08
N-terminus
sp_v3.0_unigene166923 SustainPine v3.0 458
• AutoFact: 60S ribosomal protein L7a-1 n=4 Tax=Arabidopsis RepID=RL7A1_ARATH 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.023e-08
C-terminus
sp_v3.0_unigene166929 SustainPine v3.0 371
• AutoFact: Small nuclear ribonucleoprotein Sm D2 n=4 Tax=Pleosporineae RepID=B2WJA1_PYRTR 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 3.168e-09
N-terminus
sp_v3.0_unigene166955 SustainPine v3.0 497
• AutoFact: pfam01423, LSM, LSM domain 3.0e-13
• FL-Next: tr=Glycine rich protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
Complete
sp_v3.0_unigene169019 SustainPine v3.0 271
• AutoFact: Gly_rich multi-domain protein 7.0e-17
• Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene173381 SustainPine v3.0 520
• AutoFact: Gly_rich multi-domain protein 6.0e-19
• Sma3: Putative glycine rich protein 3.78e-18
coding
sp_v3.0_unigene173854 SustainPine v3.0 447
• AutoFact: Herpes_gp2 multi-domain protein 4.0e-11
coding
sp_v3.0_unigene174775 SustainPine v3.0 352
• AutoFact: Drf_FH1 multi-domain protein 5.0e-16
• Sma3: Plus agglutinin 8.085e-09
coding
sp_v3.0_unigene183065 SustainPine v3.0 646
• AutoFact: LSM domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3QWF0_COLGM 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 6.229e-09
Complete
sp_v3.0_unigene183084 SustainPine v3.0 517
• AutoFact: Nucleolar protein family A n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CGX1_9EUKA 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene186056 SustainPine v3.0 646
• AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Putative Complete
sp_v3.0_unigene186176 SustainPine v3.0 883
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 2.0e-23
• FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 1.259e-15
Complete
sp_v3.0_unigene186410 SustainPine v3.0 483
• AutoFact: 60S ribosomal protein L7a-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXP8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.124e-08
N-terminus
sp_v3.0_unigene186719 SustainPine v3.0 645
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative ATP-dependent RNA helicase 5.578e-07
C-terminus
sp_v3.0_unigene186721 SustainPine v3.0 1027
• AutoFact: Peptidyl-tRNA hydrolase, mitochondrial n=2 Tax=Arabidopsis RepID=PTHM_ARATH 2.99878e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-tRNA hydrolase, putative 7.32e-12
Putative Complete
sp_v3.0_unigene188396 SustainPine v3.0 549
• AutoFact: ribosomal protein L7A [Bombyx mori] gb|AAV34817.1| ribosomal protein L7A [Bombyx mori] 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.032e-08
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain