Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene150757 SustainPine v3.0 184
• AutoFact: NHP2-like protein 1 homolog n=3 Tax=Caenorhabditis RepID=NH2L1_CAEEL 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.9e-08
C-terminus
sp_v3.0_unigene150884 SustainPine v3.0 425
• AutoFact: rRNA 2'Omethyltransferase fibrillarin putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WG01_9STRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.295e-08
C-terminus
sp_v3.0_unigene151192 SustainPine v3.0 403
• AutoFact: ribosomal protein L7 [Hyacinthus orientalis] 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr13 scaffold_17, whole genome shotgun sequence 0.0
Putative Complete
sp_v3.0_unigene151199 SustainPine v3.0 376
• AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.279e-08
Putative Complete
sp_v3.0_unigene151203 SustainPine v3.0 395
• AutoFact: U6 snRNA-associated Sm-like protein LSm3 n=26 Tax=Euteleostomi RepID=LSM3_HUMAN 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene151274 SustainPine v3.0 438
• AutoFact: H/ACA ribonucleoprotein complex subunit 3 n=2 Tax=Sclerotiniaceae RepID=A6S533_BOTFB 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 7.581e-09
Complete
sp_v3.0_unigene151372 SustainPine v3.0 413
• AutoFact: 60S ribosomal protein L7A-like [Solanum tuberosum] 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.467e-08
C-terminus
sp_v3.0_unigene151436 SustainPine v3.0 306
• AutoFact: small ribonucleoprotein particle protein SmD2 [Drosophila melanogaster] ref|XP_001999257.1| GI23171 [Drosophila mojavensis] ref|XP_002038554.1| GM10560 [Drosophila sechellia] ref|XP_002102358.1| GD19551 [Drosophila simulans] sp|Q9VI10.1|SMD2_DROME RecName 9.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
C-terminus
sp_v3.0_unigene151450 SustainPine v3.0 315
• AutoFact: ribosomal protein L7A [Bigelowiella natans] 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.251e-08
Internal
sp_v3.0_unigene151548 SustainPine v3.0 134
• AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene151585 SustainPine v3.0 397
• AutoFact: Ribosomal protein L7a n=1 Tax=Pfiesteria piscicida RepID=E8Z674_PFIPI 5.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene151661 SustainPine v3.0 401
• AutoFact: Ribosomal protein L7Ae/L30e/S12e/Gadd4, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P0D1_PHYIT 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene151749 SustainPine v3.0 249
• AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 9.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: snRNP-G 4.361e-09
C-terminus
sp_v3.0_unigene151867 SustainPine v3.0 427
• AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein polypeptide G 4.921e-13
Complete
sp_v3.0_unigene152032 SustainPine v3.0 378
• AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 6.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 4.296e-08
N-terminus
sp_v3.0_unigene152034 SustainPine v3.0 525
• AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_1 n=1 Tax=Blastocystis hominis RepID=D8LXA9_BLAHO 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene152401 SustainPine v3.0 413
• AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.49e-08
Putative C-terminus
sp_v3.0_unigene152461 SustainPine v3.0 457
• AutoFact: H/aca ribonucleoprotein complex subunit 2-like protein n=2 Tax=Ictalurus RepID=E3TC44_9TELE 4.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Os06g0274200 protein 9.747e-06
C-terminus
sp_v3.0_unigene152623 SustainPine v3.0 413
• AutoFact: Small nuclear ribonucleoprotein Sm D1 putative n=2 Tax=Oomycetes RepID=F0WMY5_9STRA 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear riboprotein Sm-D1 2.399e-09
Putative Complete
sp_v3.0_unigene152651 SustainPine v3.0 554
• AutoFact: Small nuclear ribonucleoprotein SmD1, putative n=19 Tax=Eurotiomycetidae RepID=Q4WHK1_ASPFU 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein Sm D1 3.707e-12
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain