Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene142026 SustainPine v3.0 876
• AutoFact: RNA-binding protein, putative [Musa acuminata] 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 1.007e-15
Putative C-terminus
sp_v3.0_unigene142284 SustainPine v3.0 469
• AutoFact: U1 snRNP-interacting 70 kDa protein [Triticum aestivum] 7.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene142689 SustainPine v3.0 603
• AutoFact: 60S ribosomal protein L7a n=11 Tax=Poaceae RepID=RL7A_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.42e-08
N-terminus
sp_v3.0_unigene142868 SustainPine v3.0 296
• AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 1.0e-18
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: 60S ribosomal protein L7a, putative 7.149e-09
Internal
sp_v3.0_unigene142889 SustainPine v3.0 308
• AutoFact: 60S ribosomal protein l7a [Oryza sativa Indica Group] 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.062e-08
Internal
sp_v3.0_unigene143906 SustainPine v3.0 594
• AutoFact: U1 snRNP-interacting 70 kDa protein [Triticum aestivum] 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 2.001e-08
N-terminus
sp_v3.0_unigene144249 SustainPine v3.0 766
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 1.411e-08
N-terminus
sp_v3.0_unigene144304 SustainPine v3.0 428
• AutoFact: putative transformer serine/arginine-rich ribonucleoprotein [Oryza sativa Japonica Group] gb|EAZ26366.1| hypothetical protein OsJ_10248 [Oryza sativa Japonica Group] 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich-splicing factor, putative 5.237e-09
Putative C-terminus
sp_v3.0_unigene144332 SustainPine v3.0 530
• AutoFact: Heterogeneous nuclear ribonucleoprotein A3 n=4 Tax=Andropogoneae RepID=B6TGB9_MAIZE 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative heterogeneous nuclearribonucleoprotein A2 5.669e-09
Internal
sp_v3.0_unigene148899 SustainPine v3.0 284
• AutoFact: CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36264.1| unknown protein [Arabidopsis thaliana] gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis 4.0e-29
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene149055 SustainPine v3.0 289
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene149497 SustainPine v3.0 126
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 3.0e-17
• FL-Next: tr=U520, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene149692 SustainPine v3.0 162
• AutoFact: Unassigned protein
• FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: CRS2-associated factor 2, mitochondrial 2.258e-09
Internal
sp_v3.0_unigene150294 SustainPine v3.0 174
• AutoFact: rRNA 2'Omethyltransferase fibrillarin putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WG01_9STRA 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin 1.905e-08
Putative C-terminus
sp_v3.0_unigene150324 SustainPine v3.0 389
• AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 3.279e-08
Putative Complete
sp_v3.0_unigene150351 SustainPine v3.0 122
• AutoFact: putative small nuclear ribonucleoprotein [Arabidopsis thaliana] gb|AEC06801.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana] 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene150431 SustainPine v3.0 392
• AutoFact: Ribosomal protein L7Ae-like [Arabidopsis thaliana] 3.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NHP2-like protein 1 2.9e-08
Putative Complete
sp_v3.0_unigene150615 SustainPine v3.0 336
• AutoFact: PREDICTED: rRNA 2''-O-methyltransferase fibrillarin-like n=1 Tax=Monodelphis domestica RepID=UPI0000F2D171 7.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin 2.95e-08
C-terminus
sp_v3.0_unigene150738 SustainPine v3.0 500
• AutoFact: Putative 60S ribosomal protein L7a n=3 Tax=Leishmania RepID=A4HT77_LEIIN 2.94273e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene150750 SustainPine v3.0 236
• AutoFact: PREDICTED: similar to Sm protein G, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A59 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein polypeptide G 4.83e-13
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain