Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene74074 SustainPine v3.0 348
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 9.398e-14
Internal
sp_v3.0_unigene74595 SustainPine v3.0 466
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 5.04467e-44
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene74913 SustainPine v3.0 287
AutoFact: Probable small nuclear ribonucleoprotein chain D2 n=2 Tax=Ustilaginaceae RepID=E6ZR78_9BASI 7.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
N-terminus
sp_v3.0_unigene75050 SustainPine v3.0 98
AutoFact: Ribosomal protein L4 n=2 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NNV8_COPC7 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L7a, putative 2.9e-09
Internal
sp_v3.0_unigene75185 SustainPine v3.0 156
AutoFact: ribosomal protein L7Ae-like [Brassica rapa] 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 1.818e-08
Putative N-terminus
sp_v3.0_unigene75637 SustainPine v3.0 187
AutoFact: Oxygen-evolving enhancer protein 1, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBO_FRIAG 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: OEE1 5.727e-31
Internal
sp_v3.0_unigene76472 SustainPine v3.0 313
AutoFact: Ribosomal protein L7a (Fragment) n=1 Tax=Lepidochitona cinerea RepID=E3P7E8_9MOLL 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene76606 SustainPine v3.0 303
AutoFact: Ribosomal protein S6, putative n=1 Tax=Trypanosoma cruzi RepID=E7LLY0_TRYCR 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NHP2-like protein 1 3.279e-08
N-terminus
sp_v3.0_unigene76663 SustainPine v3.0 158
AutoFact: putative snRNP protein [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Uncharacterized protein; Phytophthora ramorum (Sudden oak death agent). 0.0
Sma3: Putative snRNP protein 3.745e-09
N-terminus
sp_v3.0_unigene77207 SustainPine v3.0 260
AutoFact: glycine-rich RNA binding protein [Cryptococcus neoformans var. neoformans JEC21] gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC21] 8.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 1.187e-14
Internal
sp_v3.0_unigene77393 SustainPine v3.0 429
AutoFact: Gly_rich multi-domain protein 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene77691 SustainPine v3.0 278
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
N-terminus
sp_v3.0_unigene77951 SustainPine v3.0 289
AutoFact: Related to U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Sporisorium reilianum RepID=E6ZPV4_9BASI 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 2.848e-13
N-terminus
sp_v3.0_unigene79821 SustainPine v3.0 229
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 9.272e-14
Internal
sp_v3.0_unigene84077 SustainPine v3.0 284
AutoFact: DUF3729 multi-domain protein 1.0e-08
coding
sp_v3.0_unigene85135 SustainPine v3.0 289
AutoFact: GRP multi-domain protein 9.0e-10
coding
sp_v3.0_unigene86864 SustainPine v3.0 366
AutoFact: TT_ORF1 multi-domain protein 2.0e-05
coding
sp_v3.0_unigene93015 SustainPine v3.0 221
putative_coding
sp_v3.0_unigene94193 SustainPine v3.0 1928
AutoFact: RNA-binding protein AKIP1-like n=1 Tax=Solanum tuberosum RepID=Q2V9B8_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein A1, putative 2.595e-11
Complete
sp_v3.0_unigene100244 SustainPine v3.0 861
AutoFact: CRS1_YhbY domain containing protein 4.0e-12
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: CRS2-associated factor 2, mitochondrial 7.652e-09
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain