Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: thylakoid

Term: GO:0009579  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene146626 SustainPine v3.0 821
• AutoFact: Chlorophyll a-b binding protein type 2 member 2 (Fragment) n=5 Tax=Coniferales RepID=CB22_PINSY 8.0e-38
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.267e-21
Misassembled
sp_v3.0_unigene146658 SustainPine v3.0 469
• AutoFact: Chlorophyll a/b-binding protein n=1 Tax=Picea glauca RepID=Q9LKZ0_PICGL 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 4.763e-31
Putative C-terminus
sp_v3.0_unigene146693 SustainPine v3.0 266
• AutoFact: Chlorophyll A/B binding protein n=1 Tax=Jatropha curcas RepID=D0F1Q5_9ROSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.527e-26
Internal
sp_v3.0_unigene148193 SustainPine v3.0 472
• AutoFact: Putative 9-cis-epoxycarotenoid dioxygenase n=9 Tax=Cupressaceae RepID=Q0EEH1_TAXDI 0.0
• FL-Next: tr=Putative 9-cis-epoxycarotenoid dioxygenase; Taxodium distichum (Bald cypress) (Cupressus disticha). 0.0
• Sma3: 9-cis-epoxycarotenoid dioxygenase 0.0
C-terminus
sp_v3.0_unigene148239 SustainPine v3.0 362
• AutoFact: Type 1 chlorophyll a /b-binding protein (Fragment) n=1 Tax=Pinus sylvestris RepID=Q7DM40_PINSY 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Light-harvesting complex I protein Lhca1 9.077e-09
C-terminus
sp_v3.0_unigene148725 SustainPine v3.0 364
• AutoFact: chloroplast processing peptidase [Arabidopsis thaliana] sp|Q8H0W1.2|PLSP1_ARATH RecName: Full=Chloroplast processing peptidase; AltName: Full=Signal peptidase I-3; Flags: Precursor gb|AAU05529.1| At1g05140 [Arabidopsis thaliana] gb|AEE76927.1| chloroplast 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Signal peptidase I, putative 1.679e-11
Internal
sp_v3.0_unigene149685 SustainPine v3.0 220
• AutoFact: Photosystem I reaction center subunit iv b (Fragment) n=1 Tax=Camellia sinensis RepID=F4YFK2_CAMSI 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Photosystem I reaction center subunit IV A 5.415e-12
C-terminus
sp_v3.0_unigene149769 SustainPine v3.0 221
• AutoFact: Light-harvesting complex II protein Lhcb1 n=2 Tax=Magnoliophyta RepID=B9I107_POPTR 3.0e-35
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 2.229e-36
Internal
sp_v3.0_unigene149959 SustainPine v3.0 184
• AutoFact: Photosystem I reaction center subunit XI, chloroplastic n=3 Tax=Magnoliophyta RepID=PSAL_ARATH 7.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Photosystem I reaction center subunit XI, chloroplastic 2.261e-17
C-terminus
sp_v3.0_unigene150028 SustainPine v3.0 335
• AutoFact: DUF659 domain containing protein 1.0e-34
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene150032 SustainPine v3.0 127
• AutoFact: Nucleoside diphosphate kinase n=1 Tax=Kluyveromyces lactis NRRL Y-1140 RepID=Q6CS60_KLULA 1.0e-11
• FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
Internal
sp_v3.0_unigene150264 SustainPine v3.0 388
• AutoFact: heat shock protein GroEL n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C36B2 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chaperonin-60kD, ch60, putative 7.491e-11
Internal
sp_v3.0_unigene150270 SustainPine v3.0 317
• AutoFact: PREDICTED: similar to putative nucleoside diphosphate kinase n=1 Tax=Tribolium castaneum RepID=UPI0001758086 9.0e-34
• FL-Next: sp=Nucleoside diphosphate kinase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
C-terminus
sp_v3.0_unigene150290 SustainPine v3.0 436
• AutoFact: 50S ribosomal protein L13 n=3 Tax=Rhodocyclaceae RepID=RL13_AROAE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L13, chloroplastic 3.556e-19
Internal
sp_v3.0_unigene150310 SustainPine v3.0 381
• AutoFact: peroxiredoxin 4 [synthetic construct] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Thiol-specific antioxidant protein 3.6e-14
C-terminus
sp_v3.0_unigene150332 SustainPine v3.0 285
• AutoFact: Peroxiredoxin n=1 Tax=Globodera rostochiensis RepID=Q9Y082_GLORO 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Thioredoxin peroxidase 1.147e-16
Putative C-terminus
sp_v3.0_unigene150455 SustainPine v3.0 462
• AutoFact: NADH ubiquinone oxidoreductase PSST subunit n=3 Tax=rosids RepID=Q9SP38_LUPLU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NADH-plastoquinone oxidoreductase subunit K 0.0
Internal
sp_v3.0_unigene150520 SustainPine v3.0 474
• AutoFact: Chaperone protein DnaK n=12 Tax=Pseudomonas syringae group RepID=DNAK_PSE14 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock protein 70 0.0
Internal
sp_v3.0_unigene150543 SustainPine v3.0 298
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Cyanidium caldarium RepID=Q9M634_CYACA 3.0e-29
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Internal
sp_v3.0_unigene150741 SustainPine v3.0 383
• AutoFact: Nucleoside diphosphate kinase n=1 Tax=Acaryochloris marina MBIC11017 RepID=NDK_ACAM1 7.0e-39
• FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain