Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: thylakoid

Term: GO:0009579  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene73489 SustainPine v3.0 450
• AutoFact: Type II chlorophyll a /b-binding protein n=3 Tax=Pinaceae RepID=Q02070_PINSY 1.0e-22
• FL-Next: tr=Type II chlorophyll a /b-binding protein; Pinus sylvestris (Scots pine). 0.0
Putative N-terminus
sp_v3.0_unigene73549 SustainPine v3.0 406
• AutoFact: Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH 1.4013e-45
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
N-terminus
sp_v3.0_unigene73593 SustainPine v3.0 418
• AutoFact: Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NUC9_PICSI 7.0e-39
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene73647 SustainPine v3.0 484
• AutoFact: Nucleoside diphosphate kinase n=4 Tax=Paxillus RepID=Q5V8K3_PAXIN 0.0
• FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
Putative Complete
sp_v3.0_unigene73700 SustainPine v3.0 397
• AutoFact: Chlorophyll A-B binding protein (CAB), putative n=2 Tax=Magnoliophyta RepID=Q1EPK5_MUSAC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.242e-29
C-terminus
sp_v3.0_unigene73759 SustainPine v3.0 397
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=B8LMQ9_PICSI 1.0e-35
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Misassembled
sp_v3.0_unigene73764 SustainPine v3.0 463
• AutoFact: putative calcium-activated outward-rectifying potassium channel 5 [Arabidopsis thaliana] sp|Q9S6Z8.1|KCO5_ARATH RecName: Full=Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic; Short=AtKCO5; Flags: Precursor gb|AAD22646.1|AC 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Outward rectifying potassium channel 1.885e-24
Internal
sp_v3.0_unigene73809 SustainPine v3.0 265
• AutoFact: ATP synthase gamma chain, chloroplastic n=1 Tax=Spinacia oleracea RepID=ATPG_SPIOL 9.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase gamma chain 0.0
C-terminus
sp_v3.0_unigene73851 SustainPine v3.0 190
• AutoFact: cyclic nucleotide gated channel [Arabidopsis thaliana] sp|Q9LD37.1|CNG20_ARATH RecName: Full=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; AltName: Full=Cyclic nucleotide-binding transporter 1; Flags: Precursor gb|AAF73128.1|AF148541_1 c 3.0e-07
• FL-Next: sp=Probable cyclic nucleotide-gated ion channel 20, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene73876 SustainPine v3.0 208
• AutoFact: FtsH-like protein (Fragment) n=17 Tax=Triticeae RepID=Q6DVR3_HORSP 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protease ftsH homolog 2.935e-13
Internal
sp_v3.0_unigene73878 SustainPine v3.0 404
• AutoFact: Chloroplast light harvesting chlorophyll a/b binding protein (Fragment) n=7 Tax=Pinaceae RepID=Q4VV52_PINST 2.0e-39
• FL-Next: tr=Chlorophyll a/b binding protein; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
• Sma3: LHCP 7.457e-27
Putative C-terminus
sp_v3.0_unigene73942 SustainPine v3.0 438
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 4.655e-24
Putative Complete
sp_v3.0_unigene74124 SustainPine v3.0 492
• AutoFact: NAD-dependent formate dehydrogenase n=2 Tax=Gelatoporia subvermispora RepID=A9ZNT8_CERSU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Formate dehydrogenase 5.305e-19
Internal
sp_v3.0_unigene74194 SustainPine v3.0 289
• AutoFact: chloroplast chlorophyll a/b binding protein [Pachysandra terminalis] 1.0e-38
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.736e-21
Internal
sp_v3.0_unigene74263 SustainPine v3.0 471
• AutoFact: Chloroplast light harvesting chlorophyll a/b binding protein (Fragment) n=7 Tax=Pinaceae RepID=Q4VV52_PINST 9.99995e-41
• FL-Next: tr=Chlorophyll a/b binding protein; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
• Sma3: LHCP 1.743e-16
Putative Complete
sp_v3.0_unigene74425 SustainPine v3.0 428
• AutoFact: Formate dehydrogenase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NM11_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Formate dehydrogenase 3.652e-23
Internal
sp_v3.0_unigene74654 SustainPine v3.0 382
• AutoFact: Chlorophyll a/b-binding protein, photosystem II (Fragment) n=1 Tax=Platanus x acerifolia RepID=Q14K89_PLAAC 8.00001e-41
• FL-Next: sp=Chlorophyll a-b binding protein type 2 member 1B, chloroplastic; Pinus sylvestris (Scots pine). 0.0
• Sma3: LHCP 1.726e-26
Putative C-terminus
sp_v3.0_unigene74686 SustainPine v3.0 284
• AutoFact: NAD dependent formate dehydrogenase n=6 Tax=Legionella pneumophila RepID=A5IAF5_LEGPC 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Formate dehydrogenase 5.271e-16
Internal
sp_v3.0_unigene74870 SustainPine v3.0 347
• AutoFact: formate dehydrogenase [Solanum lycopersicum] 5.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Formate dehydrogenase 4.339e-19
Putative N-terminus
sp_v3.0_unigene74895 SustainPine v3.0 409
• AutoFact: Heat shock protein 70 n=1 Tax=Eisenia fetida RepID=E9NPR6_EISFO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock protein 70 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain