Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: LHCP

Source: Description from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene74654 SustainPine v3.0 382
• AutoFact: Chlorophyll a/b-binding protein, photosystem II (Fragment) n=1 Tax=Platanus x acerifolia RepID=Q14K89_PLAAC 8.00001e-41
• FL-Next: sp=Chlorophyll a-b binding protein type 2 member 1B, chloroplastic; Pinus sylvestris (Scots pine). 0.0
• Sma3: LHCP 1.726e-26
Putative C-terminus
sp_v3.0_unigene75018 SustainPine v3.0 231
• AutoFact: Type I chlorophyll a/b-binding protein b (Fragment) n=10 Tax=core eudicotyledons RepID=Q9AVF0_AMATR 1.0e-32
• FL-Next: tr=Chlorophyll a/b binding protein; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
• Sma3: LHCP 1.573e-21
Internal
sp_v3.0_unigene76295 SustainPine v3.0 154
• AutoFact: Light-harvesting chlorphyll binding protein 3 (Fragment) n=1 Tax=Solenostemon scutellarioides RepID=C9VWR2_SOLSC 3.0e-16
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.249e-13
Putative C-terminus
sp_v3.0_unigene77399 SustainPine v3.0 393
• AutoFact: Chlorophyll a-b binding protein 2 n=1 Tax=Zea mays RepID=B6SZ08_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.078e-21
C-terminus
sp_v3.0_unigene77406 SustainPine v3.0 160
• AutoFact: Chloroplast light-harvesting complex II protein Lhcbm3 n=1 Tax=Bigelowiella natans RepID=Q9LE97_BIGNA 8.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 5.957e-16
Internal
sp_v3.0_unigene78905 SustainPine v3.0 196
• AutoFact: Type 1 light-harvesting chlorophyll a/b-binding polypeptide (Fragment) n=1 Tax=Pinus palustris RepID=Q40957_PINPA 8.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.881e-21
Putative C-terminus
sp_v3.0_unigene79067 SustainPine v3.0 414
• AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.917e-16
C-terminus
sp_v3.0_unigene80558 SustainPine v3.0 215
• AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.618e-21
Putative C-terminus
sp_v3.0_unigene80649 SustainPine v3.0 400
• AutoFact: Chlorophyll a-b binding protein, chloroplastic n=16 Tax=Physcomitrella patens RepID=CB2_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 6.823e-21
Internal
sp_v3.0_unigene80694 SustainPine v3.0 193
• AutoFact: chlorophyll a/b-binding protein [Mesembryanthemum crystallinum] 1.0e-20
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.191e-18
Internal
sp_v3.0_unigene81681 SustainPine v3.0 408
• AutoFact: Chlorophyll a-b binding protein 4, chloroplastic n=2 Tax=core eudicotyledons RepID=CB24_SOLLC 3.0e-29
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 3.328e-14
Internal
sp_v3.0_unigene101904 SustainPine v3.0 523
• AutoFact: Chlorophyll A/B binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V1_RICCO 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.445e-38
Internal
sp_v3.0_unigene120281 SustainPine v3.0 320
• AutoFact: Chloroplast light-harvesting chlorophyll-a/b binding protein n=1 Tax=Ankistrodesmus convolutus RepID=C4P6Y3_9CHLO 5.0e-19
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 0.0
N-terminus
sp_v3.0_unigene127011 SustainPine v3.0 820
• AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 4.278e-31
Complete
sp_v3.0_unigene127445 SustainPine v3.0 1016
• AutoFact: chlorophyll a/b-binding protein [Pinus thunbergii] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 7.591e-31
Misassembled
sp_v3.0_unigene132995 SustainPine v3.0 449
• AutoFact: Major light-harvesting complex II protein m10 n=1 Tax=Chlamydomonas reinhardtii RepID=Q8S3U0_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.464e-23
Internal
sp_v3.0_unigene135662 SustainPine v3.0 458
• AutoFact: Chlorophyll a-b binding protein 2 n=1 Tax=Zea mays RepID=B6SZ08_MAIZE 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.092e-30
Internal
sp_v3.0_unigene135740 SustainPine v3.0 264
• AutoFact: Chlorophyll a-b binding protein of LHCII n=2 Tax=Chlamydomonas RepID=Q9ZSJ4_CHLRE 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 4.256e-29
C-terminus
sp_v3.0_unigene139141 SustainPine v3.0 350
• AutoFact: Chlorophyll a-b binding protein 3C, chloroplastic n=40 Tax=Magnoliophyta RepID=CB2G_SOLLC 0.0
• FL-Next: tr=Light-harvesting chlorophyll a/b-binding protein of photosystem II; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: LHCP 2.802e-29
C-terminus
sp_v3.0_unigene142738 SustainPine v3.0 515
• AutoFact: Chlorophyll a-b binding protein type 2 member 2 (Fragment) n=5 Tax=Coniferales RepID=CB22_PINSY 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.361e-29
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain