Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: plant-type cell wall

Term: GO:0009505  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene203548 SustainPine v3.0 363
• AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI 9.0e-29
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene203569 SustainPine v3.0 631
• AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI 0.0
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene203596 SustainPine v3.0 706
• AutoFact: Expansin 2 n=1 Tax=Zinnia violacea RepID=Q9LLB2_ZINEL 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Expansin 0.0
C-terminus
sp_v3.0_unigene203642 SustainPine v3.0 639
• AutoFact: DUF642 domain containing protein 6.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene203717 SustainPine v3.0 542
• AutoFact: Alpha-galactosidase n=1 Tax=Phaseolus vulgaris RepID=Q41100_PHAVU 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-galactosidase 1.405e-37
Putative C-terminus
sp_v3.0_unigene204337 SustainPine v3.0 425
• AutoFact: Trans-cinnamate 4-hydroxylase n=2 Tax=Pinaceae RepID=Q9XEH8_PINTA 0.0
• FL-Next: tr=Trans-cinnamate 4-hydroxylase; Pinus taeda (Loblolly pine). 0.0
• Sma3: Cinnamic acid 4-hydroxylase 0.0
Internal
sp_v3.0_unigene204391 SustainPine v3.0 310
• AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RPV5_RICCO 4.0e-38
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene205199 SustainPine v3.0 156
• AutoFact: Extensin_2 multi-domain protein 9.0e-18
• Sma3: Extensin 8.737e-22
unknown
sp_v3.0_unigene205464 SustainPine v3.0 489
• AutoFact: Prohibitin-1, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=PHB1_DICDI 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Prohibitin 2.596e-38
N-terminus
sp_v3.0_unigene205626 SustainPine v3.0 233
• AutoFact: Extensin_2 multi-domain protein 8.0e-25
• Sma3: Extensin 0.0
coding
sp_v3.0_unigene206328 SustainPine v3.0 597
• AutoFact: Trans-cinnamate 4-monooxygenase n=18 Tax=Brassicaceae RepID=TCMO_ARATH 5.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cinnamic acid 4-hydroxylase 1.4013e-45
Misassembled
sp_v3.0_unigene206425 SustainPine v3.0 297
• AutoFact: Xyloglucan endotransglucosylase/hydrolase 5 n=4 Tax=Actinidia deliciosa RepID=C0IRG4_ACTDE 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 1.38e-19
N-terminus
sp_v3.0_unigene206446 SustainPine v3.0 508
• AutoFact: Aldose 1-epimerase, putative n=1 Tax=Ricinus communis RepID=B9SZ10_RICCO 3.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Apospory-associated protein C 8.547e-18
N-terminus
sp_v3.0_unigene206723 SustainPine v3.0 681
• AutoFact: Xyloglucan endotransglycosylase n=1 Tax=Shorea parvifolia subsp. parvifolia RepID=C7F8A5_9ROSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 1.4013e-45
C-terminus
sp_v3.0_unigene206966 SustainPine v3.0 643
• AutoFact: rapid alkalinization factor 23 [Arabidopsis thaliana] dbj|BAB02748.1| unnamed protein product [Arabidopsis thaliana] gb|AAK82563.1| AT3g16570/MGL6_2 [Arabidopsis thaliana] gb|AAL62021.1| AT3g16570/MGL6_2 [Arabidopsis thaliana] gb|AAM61153.1| unknown [Arab 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RALF 1.063e-32
Complete
sp_v3.0_unigene207178 SustainPine v3.0 889
• AutoFact: DUF1421 multi-domain protein 5.0e-18
• Sma3: Extensin 3.623e-22
coding
sp_v3.0_unigene207850 SustainPine v3.0 449
• AutoFact: Putative beta-glucosidase 41 n=2 Tax=Arabidopsis RepID=BGL41_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-glucosidase 1.299e-26
Internal
sp_v3.0_unigene207888 SustainPine v3.0 403
• AutoFact: Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39) 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glucan endo-1,3-beta-glucosidase 5 2.055e-20
Putative N-terminus
sp_v3.0_unigene207929 SustainPine v3.0 348
• AutoFact: leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb|AAG28814.1|AC079374_17 unknown protein [Arabidopsis thaliana] gb|AAL08297.1| At1g25320/F4F7_17 [Arabidopsis thaliana] gb|AAQ65094.1| At1g25320/F4F7_17 [Arabidopsis thaliana] gb|ACN5 1.0e-31
• FL-Next: tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia. 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 2.201e-12
Internal
sp_v3.0_unigene208408 SustainPine v3.0 1259
• AutoFact: putative calcium/calmodulin-regulated receptor-like kinase [Oryza sativa Japonica Group] dbj|BAB92857.1| putative calcium/calmodulin-regulated receptor-like kinase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Receptor protein kinase-like 1.428e-13
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain