Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: retrograde vesicle-mediated transport, Golgi to ER

Term: GO:0006890  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene14921 SustainPine v3.0 1851
• AutoFact: coatomer-like protein, epsilon subunit [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene127901 SustainPine v3.0 1058
• AutoFact: putative endoplasmatic reticulum retrieval protein Rer1B [Oryza sativa Japonica Group] dbj|BAD53626.1| putative endoplasmatic reticulum retrieval protein Rer1B [Oryza sativa Japonica Group] gb|EAZ02311.1| hypothetical protein OsI_24412 [Oryza sativa Indic 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rer1 protein, putative 8.757e-17
Complete
sp_v3.0_unigene131725 SustainPine v3.0 380
• AutoFact: Coatomer epsilon subunit, putative n=1 Tax=Ricinus communis RepID=B9SV80_RICCO 4.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon1-COP 8.439e-09
N-terminus
sp_v3.0_unigene142836 SustainPine v3.0 348
• AutoFact: Coatomer subunit epsilon-1 n=7 Tax=Poaceae RepID=COPE1_ORYSJ 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon1-COP 1.501e-09
Misassembled
sp_v3.0_unigene144868 SustainPine v3.0 560
• AutoFact: coatomer subunit epsilon-1 [Arabidopsis thaliana] sp|Q9SA78.1|COPE1_ARATH RecName: Full=Coatomer subunit epsilon-1; AltName: Full=Epsilon-coat protein 1; Short=Epsilon-COP 1 gb|AAD25750.1|AC007060_8 Strong similarity to F19I3.7 gi|3033380 putative coatome 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon1-COP 1.351e-08
Putative N-terminus
sp_v3.0_unigene153503 SustainPine v3.0 460
• AutoFact: Vesicle coat complex COPI, epsilon subunit, putative n=1 Tax=Ixodes scapularis RepID=B7QH49_IXOSC 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon-cop 4.386e-06
Internal
sp_v3.0_unigene154612 SustainPine v3.0 392
• AutoFact: Coatomer subunit epsilon n=2 Tax=Myrmicinae RepID=F4WP22_9HYME 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene155296 SustainPine v3.0 341
• AutoFact: PREDICTED: similar to RER1 homolog n=1 Tax=Hydra magnipapillata RepID=UPI00019265D1 7.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene161467 SustainPine v3.0 350
• AutoFact: putative endoplasmatic reticulum retrieval protein Rer1B [Oryza sativa Japonica Group] dbj|BAD53626.1| putative endoplasmatic reticulum retrieval protein Rer1B [Oryza sativa Japonica Group] gb|EAZ02311.1| hypothetical protein OsI_24412 [Oryza sativa Indic 5.99994e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rer1 protein, putative 8.582e-17
Putative C-terminus
sp_v3.0_unigene193138 SustainPine v3.0 514
• AutoFact: PREDICTED: similar to RER1 homolog n=1 Tax=Hydra magnipapillata RepID=UPI00019265D1 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rer1 protein, putative 8.582e-17
Putative Complete
sp_v3.0_unigene193399 SustainPine v3.0 658
• AutoFact: RER1 protein n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UCI5_9EUKA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rer1 protein, putative 8.582e-17
Complete
sp_v3.0_unigene199943 SustainPine v3.0 709
• AutoFact: PREDICTED: similar to RER1 homolog n=1 Tax=Hydra magnipapillata RepID=UPI00019265D1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rer1 protein, putative 8.072e-17
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain