Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: COPI vesicle coat

Term: GO:0030126  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene64812 SustainPine v3.0 130
• AutoFact: Beta-COP-like protein [Arabidopsis thaliana] emb|CAB79867.1| Beta-COP-like protein [Arabidopsis thaliana] 1.0e-08
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta-2 6.743e-09
Internal
sp_v3.0_unigene67442 SustainPine v3.0 167
• AutoFact: Unassigned protein
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta-2 4.107e-09
Internal
sp_v3.0_unigene69775 SustainPine v3.0 199
• AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 3.0e-26
• FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Coatomer subunit alpha-2 2.364e-08
Internal
sp_v3.0_unigene70896 SustainPine v3.0 389
• AutoFact: putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza sativa Japonica Group] 2.0e-06
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta 6.773e-09
C-terminus
sp_v3.0_unigene72581 SustainPine v3.0 237
• AutoFact: putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza sativa Japonica Group] 1.0e-29
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta 6.31e-13
Putative C-terminus
sp_v3.0_unigene73000 SustainPine v3.0 172
• AutoFact: putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza sativa Japonica Group] 4.0e-17
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta 5.105e-13
Putative C-terminus
sp_v3.0_unigene75171 SustainPine v3.0 307
• AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit alpha-2 2.364e-08
Internal
sp_v3.0_unigene75177 SustainPine v3.0 241
• AutoFact: putative coatmer beta subunit [Fragaria x ananassa] 2.0e-16
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta-2 6.195e-09
Internal
sp_v3.0_unigene77798 SustainPine v3.0 284
• AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_15 n=1 Tax=Blastocystis hominis RepID=D8M1K8_BLAHO 1.0e-07
• FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Coatomer alpha subunit, putative 4.823e-09
Internal
sp_v3.0_unigene80668 SustainPine v3.0 139
• AutoFact: Coatomer protein complex n=1 Tax=Micromonas sp. RCC299 RepID=C1E4N8_MICSR 1.0e-15
• FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Coatomer subunit alpha-2 2.364e-08
N-terminus
sp_v3.0_unigene126265 SustainPine v3.0 896
• AutoFact: Coatomer subunit gamma (Fragment) n=4 Tax=rosids RepID=D7TQ06_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Coatomer subunit gamma 1.467e-08
Complete
sp_v3.0_unigene131694 SustainPine v3.0 714
• AutoFact: Coatomer subunit beta-1 n=7 Tax=Poaceae RepID=COPB1_ORYSJ 0.0
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta 6.528e-13
C-terminus
sp_v3.0_unigene131725 SustainPine v3.0 380
• AutoFact: Coatomer epsilon subunit, putative n=1 Tax=Ricinus communis RepID=B9SV80_RICCO 4.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon1-COP 8.439e-09
N-terminus
sp_v3.0_unigene134379 SustainPine v3.0 280
• AutoFact: Coatomer subunit beta-1 n=7 Tax=Poaceae RepID=COPB1_ORYSJ 2.0e-32
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta 6.528e-13
Internal
sp_v3.0_unigene135776 SustainPine v3.0 165
• AutoFact: putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza sativa Japonica Group] 9.0e-16
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta 5.105e-13
Putative C-terminus
sp_v3.0_unigene137267 SustainPine v3.0 415
• AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 7.0e-10
• FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene142836 SustainPine v3.0 348
• AutoFact: Coatomer subunit epsilon-1 n=7 Tax=Poaceae RepID=COPE1_ORYSJ 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon1-COP 1.501e-09
Misassembled
sp_v3.0_unigene144868 SustainPine v3.0 560
• AutoFact: coatomer subunit epsilon-1 [Arabidopsis thaliana] sp|Q9SA78.1|COPE1_ARATH RecName: Full=Coatomer subunit epsilon-1; AltName: Full=Epsilon-coat protein 1; Short=Epsilon-COP 1 gb|AAD25750.1|AC007060_8 Strong similarity to F19I3.7 gi|3033380 putative coatome 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon1-COP 1.351e-08
Putative N-terminus
sp_v3.0_unigene149065 SustainPine v3.0 246
• AutoFact: Coatomer subunit beta, putative n=1 Tax=Ricinus communis RepID=B9RNM4_RICCO 3.0e-32
• FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit beta 1.134e-12
N-terminus
sp_v3.0_unigene153503 SustainPine v3.0 460
• AutoFact: Vesicle coat complex COPI, epsilon subunit, putative n=1 Tax=Ixodes scapularis RepID=B7QH49_IXOSC 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Epsilon-cop 4.386e-06
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain