Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: transcription initiation from RNA polymerase II promoter

Term: GO:0006367  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene656 SustainPine v3.0 876
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2669 SustainPine v3.0 904
• AutoFact: putative transcription initiation factor [Oryza sativa Japonica Group] gb|ABB46979.1| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group] 6.0e-26
• FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
• Sma3: Tfiif-alpha, putative 2.447e-09
C-terminus
sp_v3.0_unigene2670 SustainPine v3.0 1287
• AutoFact: Transcription Factor IIF, Rap30/Rap74, interaction [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription Factor IIF, Rap30/Rap74, interaction 5.523e-09
Putative Complete
sp_v3.0_unigene3643 SustainPine v3.0 1276
• AutoFact: transcription initiation factor TFIID subunit D9 [Arabidopsis thaliana] gb|AAF65405.1|AF238326_1 putative TATA binding protein associated factor 24kDa subunit [Arabidopsis thaliana] gb|AAK43956.1|AF370141_1 unknown protein [Arabidopsis thaliana] gb|AAK937 2.0e-37
• FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
• Sma3: Transcription initiation factor TFIID subunit 11 2.166e-09
Complete
sp_v3.0_unigene8349 SustainPine v3.0 1236
• AutoFact: transcription initiation factor TFIID subunit D9 [Arabidopsis thaliana] gb|AAF65405.1|AF238326_1 putative TATA binding protein associated factor 24kDa subunit [Arabidopsis thaliana] gb|AAK43956.1|AF370141_1 unknown protein [Arabidopsis thaliana] gb|AAK937 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Transcription initiation factor TFIID subunit 11 2.166e-09
Complete
sp_v3.0_unigene12704 SustainPine v3.0 891
• AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene12799 SustainPine v3.0 1208
• AutoFact: TATA-box binding protein, component of TFIID and TFIIIB n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJY7_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TATA-box binding protein, component of TFIID and TFIIIB 0.0
Complete
sp_v3.0_unigene12941 SustainPine v3.0 1637
• AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription initiation factor IIF subunit beta, putative 5.167e-09
Complete
sp_v3.0_unigene15856 SustainPine v3.0 727
• AutoFact: PREDICTED: similar to TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor n=1 Tax=Vitis vinifera RepID=UPI00019835C9 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT1G55300 protein 2.121e-09
N-terminus
sp_v3.0_unigene16563 SustainPine v3.0 1983
• AutoFact: Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] ref|NP_172228.3| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] emb|CAA11525.1| transcription factor IIA large subunit [Arabidopsis thaliana] gb|AAR28029.1| TFIIA-L1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor/ transcription initiation factor 5.167e-09
Putative Complete
sp_v3.0_unigene17304 SustainPine v3.0 1950
• AutoFact: Transcription factor IIA, helical [Medicago truncatula] 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene17579 SustainPine v3.0 1110
• AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB36745.1| putative protein [Arabidopsis thaliana] emb|CAB79412.1| putative protein [Arabidopsis thaliana] gb|AAM62860.1| unknown [Arabidop 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene17673 SustainPine v3.0 1270
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene17741 SustainPine v3.0 1658
• AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB36745.1| putative protein [Arabidopsis thaliana] emb|CAB79412.1| putative protein [Arabidopsis thaliana] gb|AAM62860.1| unknown [Arabidop 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene19148 SustainPine v3.0 1772
• AutoFact: Transcription factor IIA, helical [Medicago truncatula] 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor/ transcription initiation factor 5.167e-09
Putative Complete
sp_v3.0_unigene20062 SustainPine v3.0 903
• AutoFact: Transcription initiation factor IIA subunit 2 n=1 Tax=Picea sitchensis RepID=A9NRE0_PICSI 0.0
• FL-Next: sp=Transcription initiation factor IIA subunit 2; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene21323 SustainPine v3.0 500
• AutoFact: mutant TFIIF-alpha [Arabidopsis thaliana] 1.0e-06
• FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
• Sma3: Transcription Factor IIF, Rap30/Rap74, interaction 3.392e-09
Internal
sp_v3.0_unigene21835 SustainPine v3.0 449
• AutoFact: Transcription initiation factor IIA subunit 2 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RUT3_PHYPA 4.0e-27
• FL-Next: sp=Transcription initiation factor IIA subunit 2; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene34959 SustainPine v3.0 990
• AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription initiation factor IIF subunit beta, putative 4.296e-09
N-terminus
sp_v3.0_unigene35234 SustainPine v3.0 1281
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain