Sustainpine_db
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Name: nuclear mRNA splicing, via spliceosome

Term: GO:0000398  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene74313 SustainPine v3.0 379
AutoFact: GAMYB-binding protein (Fragment) n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q84UD2_HORVD 2.00386e-43
FL-Next: tr=Putative uncharacterized protein Sb04g033860; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: GAMYB-binding protein 8.118e-08
Internal
sp_v3.0_unigene76056 SustainPine v3.0 361
AutoFact: pre-mRNA splicing factor prp1 [Cryptococcus neoformans var. neoformans JEC21] gb|AAW40677.1| pre-mRNA splicing factor prp1, putative [Cryptococcus neoformans var. neoformans JEC21] 4.0e-36
FL-Next: tr=Putative uncharacterized protein Sb08g016670; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: mRNA splicing protein 8.858e-09
Internal
sp_v3.0_unigene76663 SustainPine v3.0 158
AutoFact: putative snRNP protein [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Uncharacterized protein; Phytophthora ramorum (Sudden oak death agent). 0.0
Sma3: Putative snRNP protein 3.745e-09
N-terminus
sp_v3.0_unigene79785 SustainPine v3.0 332
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 5.0e-16
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene81594 SustainPine v3.0 181
AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene86311 SustainPine v3.0 236
AutoFact: spliceosome associated protein, putative; K12825 splicing factor 3A subunit 1 0.0001
coding
sp_v3.0_unigene93929 SustainPine v3.0 768
AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/arginine rich splicing factor, putative 4.89e-08
N-terminus
sp_v3.0_unigene99857 SustainPine v3.0 587
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 2.0e-28
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene101189 SustainPine v3.0 487
AutoFact: Splicing factor-like protein n=7 Tax=Embryophyta RepID=Q9T0I6_ARATH 0.0
FL-Next: tr=Splicing factor-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative splicing factor Prp8 3.392e-09
Internal
sp_v3.0_unigene102700 SustainPine v3.0 390
AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Os06g0167000 protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene104780 SustainPine v3.0 114
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 2.0e-08
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene107268 SustainPine v3.0 184
AutoFact: putative splicing factor Prp8 [Oryza sativa Japonica Group] 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene108057 SustainPine v3.0 367
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 9.0e-24
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene112731 SustainPine v3.0 304
AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene126094 SustainPine v3.0 1016
AutoFact: DUF1777 multi-domain protein 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor, arginine/serine-rich 2 7.233e-08
Putative C-terminus
sp_v3.0_unigene126117 SustainPine v3.0 784
AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene127036 SustainPine v3.0 1647
AutoFact: Nuclear protein skip, putative n=1 Tax=Ricinus communis RepID=B9SX87_RICCO 0.0
FL-Next: tr=Nuclear protein skip, putative; Ricinus communis (Castor bean). 0.0
Sma3: Pre-mRNA-splicing factor prp45 2.953e-09
Putative Complete
sp_v3.0_unigene127116 SustainPine v3.0 894
AutoFact: Nuclear protein skip, putative n=1 Tax=Ricinus communis RepID=B9SX87_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Pre-mRNA-splicing factor prp45 1.616e-09
C-terminus
sp_v3.0_unigene128251 SustainPine v3.0 585
AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 5.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor RSP41 1.538e-16
N-terminus
sp_v3.0_unigene130292 SustainPine v3.0 601
AutoFact: Nuclear protein skip, putative n=1 Tax=Ricinus communis RepID=B9SX87_RICCO 1.0e-37
FL-Next: tr=Nuclear protein skip, putative; Ricinus communis (Castor bean). 0.0
Sma3: Pre-mRNA-splicing factor prp45 1.39e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain