Sustainpine_db
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Name: nuclear mRNA splicing, via spliceosome

Term: GO:0000398  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene37589 SustainPine v3.0 1212
• AutoFact: DUF1777 multi-domain protein 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene37630 SustainPine v3.0 622
• AutoFact: pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cwf15/Cwc15 cell cycle control family protein 8.408e-10
C-terminus
sp_v3.0_unigene37637 SustainPine v3.0 770
• AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 5.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/arginine rich splicing factor, putative 4.296e-08
Putative Complete
sp_v3.0_unigene37694 SustainPine v3.0 661
• AutoFact: U1 snRNP-interacting 70 kDa protein [Triticum aestivum] 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 4.913e-13
N-terminus
sp_v3.0_unigene38765 SustainPine v3.0 1246
• AutoFact: arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana] sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31 gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana] gb|AAM78075.1| AT3g61860/F21F14_30 [Arab 0.0
• FL-Next: sp=Arginine/serine-rich-splicing factor RSP31; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 2.678e-16
Complete
sp_v3.0_unigene44113 SustainPine v3.0 2808
• AutoFact: pfam02731, SKIP_SNW, SKIP/SNW domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pre-mRNA-splicing factor prp45 3.622e-09
Complete
sp_v3.0_unigene45985 SustainPine v3.0 1011
• AutoFact: splicing factor-like protein [Vitis riparia] 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.735e-16
Putative N-terminus
sp_v3.0_unigene48497 SustainPine v3.0 273
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein Sb10g004682; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene52751 SustainPine v3.0 83
• AutoFact: Splicing factor-like protein n=7 Tax=Embryophyta RepID=Q9T0I6_ARATH 2.0e-06
• FL-Next: tr=Pre-mRNA-processing-splicing factor; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene56975 SustainPine v3.0 328
• AutoFact: splicing factor SC35 [Arabidopsis thaliana] 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Splicing factor, arginine/serine-rich 2 4.193e-08
N-terminus
sp_v3.0_unigene57725 SustainPine v3.0 140
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis (Green alga). 0.0
Internal
sp_v3.0_unigene59176 SustainPine v3.0 431
• AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene60528 SustainPine v3.0 326
• AutoFact: splicing factor-like protein [Vitis riparia] 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 5.335e-08
N-terminus
sp_v3.0_unigene62369 SustainPine v3.0 250
• AutoFact: putative splicing factor Prp8 [Oryza sativa Japonica Group] 4.0e-37
• FL-Next: tr=Putative uncharacterized protein Sb10g004682; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene62542 SustainPine v3.0 232
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 4.0e-36
• FL-Next: tr=Putative uncharacterized protein Sb10g004682; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Putative N-terminus
sp_v3.0_unigene64087 SustainPine v3.0 211
• AutoFact: Splicing factor-like protein n=7 Tax=Embryophyta RepID=Q9T0I6_ARATH 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene67584 SustainPine v3.0 342
• AutoFact: putative pre-mRNA splicing factor [Arabidopsis thaliana] 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Putative pre-mRNA splicing factor 3.477e-08
Internal
sp_v3.0_unigene69790 SustainPine v3.0 122
• AutoFact: pfam02731, SKIP_SNW, SKIP/SNW domain 2.0e-10
• FL-Next: tr=Nuclear protein skip, putative; Ricinus communis (Castor bean). 0.0
• Sma3: GAMYB-binding protein 3.212e-08
Internal
sp_v3.0_unigene70069 SustainPine v3.0 270
• AutoFact: small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis 6.0e-12
• FL-Next: sp=Small nuclear ribonucleoprotein-associated protein; Vitis vinifera (Grape). 0.0
• Sma3: Putative snRNP protein 4.39e-09
Internal
sp_v3.0_unigene73731 SustainPine v3.0 530
• AutoFact: Unassigned protein
• FL-Next: Isoform Short of U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain