Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: spliceosomal complex

Term: GO:0005681  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene69790 SustainPine v3.0 122
• AutoFact: pfam02731, SKIP_SNW, SKIP/SNW domain 2.0e-10
• FL-Next: tr=Nuclear protein skip, putative; Ricinus communis (Castor bean). 0.0
• Sma3: GAMYB-binding protein 3.212e-08
Internal
sp_v3.0_unigene70706 SustainPine v3.0 185
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 9.0e-18
• FL-Next: tr=Potassium channel regulatory factor, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Prp18 domain containing protein 9.88e-10
Internal
sp_v3.0_unigene74313 SustainPine v3.0 379
• AutoFact: GAMYB-binding protein (Fragment) n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q84UD2_HORVD 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein Sb04g033860; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
• Sma3: GAMYB-binding protein 8.118e-08
Internal
sp_v3.0_unigene81594 SustainPine v3.0 181
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene94835 SustainPine v3.0 448
• AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 1.0e-34
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Prp18 domain containing protein 2.953e-09
C-terminus
sp_v3.0_unigene95465 SustainPine v3.0 1154
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 0.0
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Prp18 domain containing protein 1.818e-09
N-terminus
sp_v3.0_unigene97126 SustainPine v3.0 488
• AutoFact: mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana] gb|AAS49089.1| At3g24730 [Arabidopsis thaliana] gb|AEE76940.1| mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana] 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene100870 SustainPine v3.0 282
• AutoFact: Step II splicing factor slu7, putative n=1 Tax=Ricinus communis RepID=B9SF44_RICCO 3.0e-28
• FL-Next: sp=Pre-mRNA-splicing factor SLU7-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene101189 SustainPine v3.0 487
• AutoFact: Splicing factor-like protein n=7 Tax=Embryophyta RepID=Q9T0I6_ARATH 0.0
• FL-Next: tr=Splicing factor-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative splicing factor Prp8 3.392e-09
Internal
sp_v3.0_unigene101453 SustainPine v3.0 761
• AutoFact: Unassigned protein 4.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene102700 SustainPine v3.0 390
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Os06g0167000 protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene107268 SustainPine v3.0 184
• AutoFact: putative splicing factor Prp8 [Oryza sativa Japonica Group] 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene112731 SustainPine v3.0 304
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene126117 SustainPine v3.0 784
• AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 5.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene127036 SustainPine v3.0 1647
• AutoFact: Nuclear protein skip, putative n=1 Tax=Ricinus communis RepID=B9SX87_RICCO 0.0
• FL-Next: tr=Nuclear protein skip, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Pre-mRNA-splicing factor prp45 2.953e-09
Putative Complete
sp_v3.0_unigene127116 SustainPine v3.0 894
• AutoFact: Nuclear protein skip, putative n=1 Tax=Ricinus communis RepID=B9SX87_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pre-mRNA-splicing factor prp45 1.616e-09
C-terminus
sp_v3.0_unigene127429 SustainPine v3.0 604
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Prp18 domain containing protein 1.818e-09
Internal
sp_v3.0_unigene128251 SustainPine v3.0 585
• AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.538e-16
N-terminus
sp_v3.0_unigene130292 SustainPine v3.0 601
• AutoFact: Nuclear protein skip, putative n=1 Tax=Ricinus communis RepID=B9SX87_RICCO 1.0e-37
• FL-Next: tr=Nuclear protein skip, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Pre-mRNA-splicing factor prp45 1.39e-09
C-terminus
sp_v3.0_unigene138476 SustainPine v3.0 303
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain