Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: spliceosomal complex

Term: GO:0005681  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene32447 SustainPine v3.0 646
• AutoFact: pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cwf15/Cwc15 cell cycle control family protein 6.299e-10
N-terminus
sp_v3.0_unigene35135 SustainPine v3.0 567
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene36107 SustainPine v3.0 440
• AutoFact: splicing factor-like protein [Vitis riparia] 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.706e-16
N-terminus
sp_v3.0_unigene36971 SustainPine v3.0 1362
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.825e-16
Complete
sp_v3.0_unigene37326 SustainPine v3.0 863
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene37630 SustainPine v3.0 622
• AutoFact: pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cwf15/Cwc15 cell cycle control family protein 8.408e-10
C-terminus
sp_v3.0_unigene38765 SustainPine v3.0 1246
• AutoFact: arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana] sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31 gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana] gb|AAM78075.1| AT3g61860/F21F14_30 [Arab 0.0
• FL-Next: sp=Arginine/serine-rich-splicing factor RSP31; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 2.678e-16
Complete
sp_v3.0_unigene39967 SustainPine v3.0 258
• AutoFact: mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana] gb|AAS49089.1| At3g24730 [Arabidopsis thaliana] gb|AEE76940.1| mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana] 6.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene44113 SustainPine v3.0 2808
• AutoFact: pfam02731, SKIP_SNW, SKIP/SNW domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pre-mRNA-splicing factor prp45 3.622e-09
Complete
sp_v3.0_unigene44862 SustainPine v3.0 458
• AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 6.0e-33
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Prp18 domain containing protein 2.953e-09
C-terminus
sp_v3.0_unigene45985 SustainPine v3.0 1011
• AutoFact: splicing factor-like protein [Vitis riparia] 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 1.735e-16
Putative N-terminus
sp_v3.0_unigene48497 SustainPine v3.0 273
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein Sb10g004682; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene52751 SustainPine v3.0 83
• AutoFact: Splicing factor-like protein n=7 Tax=Embryophyta RepID=Q9T0I6_ARATH 2.0e-06
• FL-Next: tr=Pre-mRNA-processing-splicing factor; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene57590 SustainPine v3.0 406
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene57725 SustainPine v3.0 140
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis (Green alga). 0.0
Internal
sp_v3.0_unigene59176 SustainPine v3.0 431
• AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene60528 SustainPine v3.0 326
• AutoFact: splicing factor-like protein [Vitis riparia] 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 5.335e-08
N-terminus
sp_v3.0_unigene62369 SustainPine v3.0 250
• AutoFact: putative splicing factor Prp8 [Oryza sativa Japonica Group] 4.0e-37
• FL-Next: tr=Putative uncharacterized protein Sb10g004682; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene62542 SustainPine v3.0 232
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 4.0e-36
• FL-Next: tr=Putative uncharacterized protein Sb10g004682; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Putative N-terminus
sp_v3.0_unigene64087 SustainPine v3.0 211
• AutoFact: Splicing factor-like protein n=7 Tax=Embryophyta RepID=Q9T0I6_ARATH 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain