Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: RNA polymerase II transcription factor activity

Term: GO:0003702  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene140600 SustainPine v3.0 503
unknown
sp_v3.0_unigene140622 SustainPine v3.0 516
AutoFact: putative transcription initiation factor [Oryza sativa Japonica Group] gb|ABB46979.1| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group] 2.0e-20
FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
Putative C-terminus
sp_v3.0_unigene142542 SustainPine v3.0 488
AutoFact: Tfiif-alpha, putative n=1 Tax=Ricinus communis RepID=B9S068_RICCO 9.0e-31
FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
Sma3: Transcription Factor IIF, Rap30/Rap74, interaction 3.335e-09
Putative N-terminus
sp_v3.0_unigene143189 SustainPine v3.0 400
AutoFact: TFIIF_alpha multi-domain protein 2.0e-33
Sma3: Transcription Factor IIF, Rap30/Rap74, interaction 4.688e-09
coding
sp_v3.0_unigene143311 SustainPine v3.0 515
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene143532 SustainPine v3.0 348
AutoFact: mutant TFIIF-alpha [Arabidopsis thaliana] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription Factor IIF, Rap30/Rap74, interaction 2.643e-09
N-terminus
sp_v3.0_unigene144104 SustainPine v3.0 243
AutoFact: Unassigned protein 8.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene144395 SustainPine v3.0 477
AutoFact: Unassigned protein 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene154280 SustainPine v3.0 537
AutoFact: Transcription initiation factor TFIID subunit 13 n=2 Tax=Dictyostelium RepID=TAF13_DICDI 8.0e-28
FL-Next: tr=Transcription initiation factor IID 18 kDa subunit (TAFII-18) family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Complete
sp_v3.0_unigene154476 SustainPine v3.0 341
AutoFact: TATA-box-binding protein n=1 Tax=Acanthamoeba castellanii RepID=TBP_ACACA 7.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor TFIID TBP-1 subunit 2.651e-12
Putative N-terminus
sp_v3.0_unigene156271 SustainPine v3.0 441
AutoFact: TATA-box-binding protein n=1 Tax=Acanthamoeba castellanii RepID=TBP_ACACA 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor TFIID TBP-1 subunit 2.514e-12
N-terminus
sp_v3.0_unigene157940 SustainPine v3.0 455
AutoFact: TATA-box-binding protein n=1 Tax=Acanthamoeba castellanii RepID=TBP_ACACA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor TFIID TBP-1 subunit 2.651e-12
N-terminus
sp_v3.0_unigene159382 SustainPine v3.0 170
AutoFact: putative elongation factor (ISS) [Ostreococcus tauri] emb|CAL56002.1| putative elongation factor (ISS) [Ostreococcus tauri] 6.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene160233 SustainPine v3.0 272
AutoFact: BAH domain-containing protein, putative n=2 Tax=Solanum lycopersicum RepID=Q53J12_SOLLC 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene162661 SustainPine v3.0 408
AutoFact: Transcription initiation factor IIA subunit 2 n=1 Tax=Picea sitchensis RepID=A9NRE0_PICSI 1.0e-24
FL-Next: sp=Transcription initiation factor IIA subunit 2; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor IIA subunit 2 6.229e-09
N-terminus
sp_v3.0_unigene164507 SustainPine v3.0 137
AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor IIF subunit beta, putative 4.622e-09
Internal
sp_v3.0_unigene181484 SustainPine v3.0 303
putative_coding
sp_v3.0_unigene183277 SustainPine v3.0 454
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene185339 SustainPine v3.0 493
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene189235 SustainPine v3.0 443
AutoFact: Transcription Factor IIF, Rap30/Rap74, interaction [Medicago truncatula] 3.0e-23
FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
Sma3: Transcription Factor IIF, Rap30/Rap74, interaction 2.447e-09
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain