Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene59928 SustainPine v3.0 325
• AutoFact: S18.A ribosomal protein [Arabidopsis thaliana] gb|AAL47385.1| S18.A ribosomal protein [Arabidopsis thaliana] 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 6.309e-12
Internal
sp_v3.0_unigene64501 SustainPine v3.0 210
• AutoFact: 50S ribosomal protein L4, chloroplastic n=1 Tax=Nicotiana tabacum RepID=RK4_TOBAC 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: R-protein L4 2.785e-13
Internal
sp_v3.0_unigene65950 SustainPine v3.0 117
• AutoFact: 40S ribosomal protein S9 [Catharanthus roseus] 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.911e-20
Internal
sp_v3.0_unigene66310 SustainPine v3.0 267
• AutoFact: 50S ribosomal protein l19 [Oryza sativa Indica Group] 4.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plastid ribosomal protein L19, putative 3.335e-09
C-terminus
sp_v3.0_unigene67987 SustainPine v3.0 199
• AutoFact: putative ribosomal-like protein [Atropa belladonna] 6.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene68178 SustainPine v3.0 231
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 6.616e-31
C-terminus
sp_v3.0_unigene68483 SustainPine v3.0 373
• AutoFact: 50S ribosomal protein L1 [Arabidopsis thaliana] sp|Q9LY66.1|RK1_ARATH RecName: Full=50S ribosomal protein L1, chloroplastic; AltName: Full=CL1; Flags: Precursor emb|CAB87802.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gb|AAK96640.1| AT 7.00649e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L1, chloroplastic 3.92364e-44
C-terminus
sp_v3.0_unigene72674 SustainPine v3.0 300
• AutoFact: Putative plastid ribosomal protein L11 [Oryza sativa Japonica Group] 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L11, chloroplastic 5.47207e-42
Internal
sp_v3.0_unigene73830 SustainPine v3.0 323
• AutoFact: putative ribosomal protein [Capsicum annuum] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.209e-12
Internal
sp_v3.0_unigene73917 SustainPine v3.0 290
• AutoFact: Small nucleolar RNP protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NGL5_COPC7 1.0e-22
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.913e-09
N-terminus
sp_v3.0_unigene74297 SustainPine v3.0 374
• AutoFact: PREDICTED: ribosomal protein L12-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBC093 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 6.015e-19
N-terminus
sp_v3.0_unigene74462 SustainPine v3.0 448
• AutoFact: 60S ribosomal protein L12 n=1 Tax=Postia placenta Mad-698-R RepID=B8P7S1_POSPM 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 6.362e-19
N-terminus
sp_v3.0_unigene74701 SustainPine v3.0 394
• AutoFact: Ribosomal protein L37 n=1 Tax=Moniliophthora perniciosa FA553 RepID=E2LSH3_MONPE 7.0e-31
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Putative Complete
sp_v3.0_unigene74704 SustainPine v3.0 414
• AutoFact: 50S ribosomal protein L14 n=4 Tax=Pleosporineae RepID=B2WH53_PYRTR 2.0e-36
• FL-Next: sp=50S ribosomal protein L14, chloroplastic; Taiwania cryptomerioides. Plastid; Chloroplast. 0.0
• Sma3: HUELLENLOS-like protein 2.745e-09
C-terminus
sp_v3.0_unigene74929 SustainPine v3.0 360
• AutoFact: Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Chlamydomonadales RepID=A8JGF8_CHLRE 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 9.80909e-45
C-terminus
sp_v3.0_unigene75069 SustainPine v3.0 313
• AutoFact: 60S ribosomal protein L12-3 [Arabidopsis thaliana] sp|Q9FF52.1|RL123_ARATH RecName: Full=60S ribosomal protein L12-3 dbj|BAB09840.1| 60S ribosomal protein L12 [Arabidopsis thaliana] gb|AAK62669.1| AT5g60670/mup24_80 [Arabidopsis thaliana] gb|AAL77726.1| A 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.052e-15
C-terminus
sp_v3.0_unigene76513 SustainPine v3.0 279
• AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_15 n=1 Tax=Blastocystis hominis RepID=D8M187_BLAHO 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.131e-20
Putative C-terminus
sp_v3.0_unigene76543 SustainPine v3.0 301
• AutoFact: Ribosomal family S4e containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBCC9 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.819e-14
Internal
sp_v3.0_unigene76669 SustainPine v3.0 193
• AutoFact: PREDICTED: similar to ribosomal protein S18e [Tribolium castaneum] gb|EFA04159.1| hypothetical protein TcasGA2_TC014405 [Tribolium castaneum] 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 1.95e-12
N-terminus
sp_v3.0_unigene77282 SustainPine v3.0 256
• AutoFact: ribosomal protein S4 [Panax ginseng] 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.834e-17
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain