Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene35739 SustainPine v3.0 1124
• AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q5M9U0_TOBAC 0.0
• FL-Next: sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein S4 3.55299e-41
Complete
sp_v3.0_unigene35747 SustainPine v3.0 312
• AutoFact: Putative 60S ribosomal protein RPL12 n=1 Tax=Phoronis muelleri RepID=B2YI34_9BILA 5.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.541e-15
Internal
sp_v3.0_unigene35816 SustainPine v3.0 468
• AutoFact: Ribosomal protein L37 n=2 Tax=Sclerotiniaceae RepID=A7F605_SCLS1 3.0e-36
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene36690 SustainPine v3.0 847
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 5.46506e-44
Complete
sp_v3.0_unigene39419 SustainPine v3.0 474
• AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 7.0e-08
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 1.411e-09
Putative C-terminus
sp_v3.0_unigene40353 SustainPine v3.0 524
• AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 0.0
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chromosome chr8 scaffold_34, whole genome shotgun sequence 0.0
Putative C-terminus
sp_v3.0_unigene45050 SustainPine v3.0 1247
• AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q5M9U0_TOBAC 0.0
• FL-Next: sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein S4 3.55299e-41
Putative Complete
sp_v3.0_unigene46349 SustainPine v3.0 733
• AutoFact: RecName: Full=50S ribosomal protein L3, chloroplastic; Flags: Precursor pdb|3BBO|F Chain F, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome dbj|BAA31509.1| chloroplast ribosomal protein L3 [Nicot 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L3, chloroplastic 0.0
C-terminus
sp_v3.0_unigene51299 SustainPine v3.0 577
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.85697e-41
Putative C-terminus
sp_v3.0_unigene52017 SustainPine v3.0 461
• AutoFact: 60S ribosomal protein l19, mitochondrial, putative n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=E6R107_CRYGW 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L11, chloroplastic 5.017e-11
Putative N-terminus
sp_v3.0_unigene52107 SustainPine v3.0 313
• AutoFact: Ribosomal protein L37 n=1 Tax=Picea sitchensis RepID=A9NJS5_PICSI 2.0e-36
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Putative N-terminus
sp_v3.0_unigene52514 SustainPine v3.0 370
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 8.377e-36
N-terminus
sp_v3.0_unigene53220 SustainPine v3.0 104
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene54163 SustainPine v3.0 155
• AutoFact: 50S ribosomal protein L2 n=1 Tax=Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 RepID=D7GJ32_PROFC 3.0e-15
• FL-Next: sp=50S ribosomal protein L2, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
Internal
sp_v3.0_unigene56135 SustainPine v3.0 261
• AutoFact: putative 40S ribosomal protein S9 [Artemisia annua] 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.064e-34
Putative C-terminus
sp_v3.0_unigene56568 SustainPine v3.0 226
• AutoFact: RecName: Full=60S ribosomal protein L23a gb|AAK30202.1|AF349961_1 ribosome protein L23a [Daucus carota] 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.918e-10
Internal
sp_v3.0_unigene56647 SustainPine v3.0 80
• AutoFact: Ribosomal protein L2 (Fragment) n=3 Tax=Pinaceae RepID=Q14EM9_PSEMZ 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L2 4.232e-13
Internal
sp_v3.0_unigene56852 SustainPine v3.0 121
• AutoFact: 30S ribosomal protein S3, chloroplastic n=41 Tax=Pinaceae RepID=RR3_PICAB 1.0e-09
• FL-Next: sp=30S ribosomal protein S3, chloroplastic; Pinus arizonica. Plastid; Chloroplast. 0.0
• Sma3: 30S ribosomal protein S3, chloroplastic 0.0
C-terminus
sp_v3.0_unigene57082 SustainPine v3.0 345
• AutoFact: Ribosomal protein L2 (Fragment) n=3 Tax=Pinaceae RepID=Q14EM9_PSEMZ 9.99995e-41
• FL-Next: sp=50S ribosomal protein L2, chloroplastic; Pinus arizonica. Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein L2 9.824e-35
Internal
sp_v3.0_unigene57451 SustainPine v3.0 277
• AutoFact: 40S ribosomal protein S4 n=1 Tax=Prunus armeniaca RepID=RS4_PRUAR 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 1.757e-20
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain