Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene189279 SustainPine v3.0 470
• AutoFact: Ribosomal protein L37 n=1 Tax=Zea mays RepID=B6SJJ8_MAIZE 3.0e-34
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene189295 SustainPine v3.0 399
• AutoFact: L12 n=1 Tax=Suberites domuncula RepID=Q4KTH4_SUBDO 7.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.708e-19
N-terminus
sp_v3.0_unigene189509 SustainPine v3.0 514
• AutoFact: Putative ribosomal protein S4 (Fragment) n=1 Tax=Barentsia elongata RepID=A8UAC7_9BILA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.563e-24
Putative C-terminus
sp_v3.0_unigene189843 SustainPine v3.0 685
• AutoFact: 40S ribosomal protein S4 n=4 Tax=Obtectomera RepID=RS4_BOMMO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.456e-24
C-terminus
sp_v3.0_unigene189984 SustainPine v3.0 517
• AutoFact: 60S ribosomal protein L3, mitochondrial precursor [Neurospora crassa OR74A] emb|CAD70397.1| related to ribosomal protein L3 precursor, mitochondrial [Neurospora crassa] gb|EAA34285.1| 60S ribosomal protein L3, mitochondrial precursor [Neurospora crassa OR 4.99983e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene190647 SustainPine v3.0 481
• AutoFact: 40S ribosomal protein S91 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WMR6_9STRA 8.40779e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 9.80909e-45
C-terminus
sp_v3.0_unigene191021 SustainPine v3.0 379
• AutoFact: 40S ribosomal protein S11 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NHB6_PHYIT 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.211e-35
C-terminus
sp_v3.0_unigene191101 SustainPine v3.0 421
• AutoFact: Ribosomal protein S18, component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SBF6_OSTLU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 8.32e-12
Putative Complete
sp_v3.0_unigene191475 SustainPine v3.0 421
• AutoFact: Ribosomal protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4D6_MICSR 2.99878e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.286e-35
C-terminus
sp_v3.0_unigene191756 SustainPine v3.0 354
• AutoFact: 60S rat ribosomal protein L23 n=2 Tax=Sclerotiniaceae RepID=A6SFR7_BOTFB 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.554e-10
C-terminus
sp_v3.0_unigene191958 SustainPine v3.0 472
• AutoFact: PREDICTED: ribosomal protein L23a-like isoform 1 n=3 Tax=Eutheria RepID=UPI0001D56DBB 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 1.992e-10
Putative Complete
sp_v3.0_unigene192025 SustainPine v3.0 238
• AutoFact: 60S ribosomal protein L12-like protein n=1 Tax=Phlebotomus papatasi RepID=A8C9X1_PHLPP 4.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene192102 SustainPine v3.0 477
• AutoFact: KLTH0C07810p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DEB4_LACTC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.097e-28
Putative Complete
sp_v3.0_unigene192155 SustainPine v3.0 663
• AutoFact: 40S ribosomal protein rpS18e n=1 Tax=Tetrahymena thermophila RepID=E6PBT6_TETTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.327e-12
Complete
sp_v3.0_unigene192520 SustainPine v3.0 505
• AutoFact: Protein Y57G11C.16, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=O18240_CAEEL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.209e-12
Putative Complete
sp_v3.0_unigene192686 SustainPine v3.0 514
• AutoFact: 60S ribosomal protein L12, putative n=3 Tax=Chromadorea RepID=A8NPJ4_BRUMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 6.29e-15
Putative Complete
sp_v3.0_unigene193208 SustainPine v3.0 413
• AutoFact: PREDICTED: 40S ribosomal protein S4-like isoform 1 [Apis mellifera] 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.504e-24
N-terminus
sp_v3.0_unigene193230 SustainPine v3.0 560
• AutoFact: 50S ribosomal protein L2 n=3 Tax=Alistipes RepID=D4IMJ4_9BACT 0.0
• FL-Next: sp=50S ribosomal protein L2, chloroplastic; Nageia nagi. Plastid; Chloroplast. 0.0
• Sma3: 50S ribosomal protein L2, chloroplastic 0.0
Putative C-terminus
sp_v3.0_unigene193460 SustainPine v3.0 448
• AutoFact: 60S ribosomal protein L11 [Chlamydomonas incerta] 5.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 3.69e-11
C-terminus
sp_v3.0_unigene193622 SustainPine v3.0 279
• AutoFact: PREDICTED: similar to Ribosomal protein S9 isoform 2 n=1 Tax=Pan troglodytes RepID=UPI000058BD08 2.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 8.40779e-45
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain