Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene158097 SustainPine v3.0 394
• AutoFact: ribosomal protein S4 [Myxine glutinosa] 3.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.043e-20
C-terminus
sp_v3.0_unigene158188 SustainPine v3.0 469
• AutoFact: Ribosomal protein S4 n=3 Tax=Polyphaga RepID=D1M809_9CUCU 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.955e-24
N-terminus
sp_v3.0_unigene158231 SustainPine v3.0 401
• AutoFact: 40S ribosomal protein S9 n=7 Tax=Ajellomyces RepID=C0NLR5_AJECG 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.54143e-44
Putative C-terminus
sp_v3.0_unigene158249 SustainPine v3.0 364
• AutoFact: 40S ribosomal protein S9 (S7) n=2 Tax=Metarhizium RepID=E9EUL6_METAR 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.283e-40
C-terminus
sp_v3.0_unigene158411 SustainPine v3.0 518
• AutoFact: 40S ribosomal protein S4 n=4 Tax=Obtectomera RepID=RS4_BOMMO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.504e-24
N-terminus
sp_v3.0_unigene158445 SustainPine v3.0 231
• AutoFact: 40S ribosomal protein S9 n=1 Tax=Guillardia theta RepID=Q98S15_GUITH 7.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.805e-26
N-terminus
sp_v3.0_unigene158655 SustainPine v3.0 198
• AutoFact: [J] COG1471 Ribosomal protein S4E 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus
sp_v3.0_unigene158659 SustainPine v3.0 160
• AutoFact: 60S ribosomal protein L11 n=19 Tax=leotiomyceta RepID=Q4WP20_ASPFU 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 3.151e-11
Internal
sp_v3.0_unigene158678 SustainPine v3.0 264
• AutoFact: 40S ribosomal protein S4 n=3 Tax=core eudicotyledons RepID=RS4_SOLTU 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.955e-24
N-terminus
sp_v3.0_unigene158787 SustainPine v3.0 392
• AutoFact: Ribosomal protein rpl23a (Fragment) n=1 Tax=Lineus viridis RepID=B0Z9M5_9BILA 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 1.992e-10
N-terminus
sp_v3.0_unigene158843 SustainPine v3.0 249
• AutoFact: Ribosomal protein S4, component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S956_OSTLU 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus
sp_v3.0_unigene158877 SustainPine v3.0 268
• AutoFact: 40S ribosomal protein S4 n=2 Tax=Tetrahymena thermophila RepID=RS4_TETTH 5.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus
sp_v3.0_unigene159015 SustainPine v3.0 290
• AutoFact: 60S ribosomal protein n=1 Tax=Aureococcus anophagefferens RepID=F0YN25_9STRA 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.762e-10
C-terminus
sp_v3.0_unigene159018 SustainPine v3.0 302
• AutoFact: 40S ribosomal protein S4 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WD75_9STRA 8.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 6.787e-17
Internal
sp_v3.0_unigene159019 SustainPine v3.0 437
• AutoFact: 30S ribosomal protein S13 n=2 Tax=Thermaerobacter RepID=E6SKX5_THEM7 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 30S ribosomal protein S13, chloroplastic 2.66247e-42
C-terminus
sp_v3.0_unigene159021 SustainPine v3.0 238
• AutoFact: Ribosomal protein S7 n=2 Tax=Pinaceae RepID=C3VZF9_ABIFI 4.0e-36
• FL-Next: sp=30S ribosomal protein S7, chloroplastic; Pinus arizonica. Plastid; Chloroplast. 0.0
• Sma3: 30S ribosomal protein S7, chloroplastic 4.704e-24
Internal
sp_v3.0_unigene159140 SustainPine v3.0 373
• AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT 3.9937e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.623e-37
Internal
sp_v3.0_unigene159490 SustainPine v3.0 418
• AutoFact: 30S ribosomal protein S14 n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QSF7_SPILD 4.0e-36
• FL-Next: sp=30S ribosomal protein S14, chloroplastic; Pseudotsuga menziesii var. menziesii. Plastid; Chloroplast. 0.0
• Sma3: 30S ribosomal protein S14, chloroplastic 2.39e-22
Putative Complete
sp_v3.0_unigene159552 SustainPine v3.0 473
• AutoFact: 60S ribosomal protein L12 n=1 Tax=Postia placenta Mad-698-R RepID=B8P7S1_POSPM 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 6.362e-19
N-terminus
sp_v3.0_unigene160062 SustainPine v3.0 443
• AutoFact: 30S ribosomal protein S13 n=15 Tax=Bradyrhizobiaceae RepID=RS13_BRASB 8.99999e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain