Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene155334 SustainPine v3.0 252
• AutoFact: Ribosomal protein S9 n=2 Tax=Protostomia RepID=A9LMJ6_HALDI 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 6.735e-26
Putative N-terminus
sp_v3.0_unigene155364 SustainPine v3.0 337
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 5.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.49196e-41
C-terminus
sp_v3.0_unigene155365 SustainPine v3.0 501
• AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.938e-12
Putative Complete
sp_v3.0_unigene155432 SustainPine v3.0 303
• AutoFact: 40S ribosomal protein S11, putative n=4 Tax=Chromadorea RepID=A8PT63_BRUMA 6.99949e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 3.336e-24
Internal
sp_v3.0_unigene155463 SustainPine v3.0 376
• AutoFact: 40S ribosomal protein S9 n=2 Tax=Dictyostelium RepID=RS9_DICDI 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.102e-29
N-terminus
sp_v3.0_unigene155491 SustainPine v3.0 464
• AutoFact: 40S ribosomal protein S4 [Bombyx mori] sp|Q5UAP0.1|RS4_BOMMO RecName: Full=40S ribosomal protein S4 gb|AAV34860.1| ribosomal protein S4 [Bombyx mori] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.504e-24
N-terminus
sp_v3.0_unigene155502 SustainPine v3.0 563
• AutoFact: 40S ribosomal protein S11 [Cyanophora paradoxa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.333e-28
Complete
sp_v3.0_unigene155575 SustainPine v3.0 476
• AutoFact: 60S ribosomal protein L11 n=19 Tax=leotiomyceta RepID=Q4WP20_ASPFU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 2.963e-11
N-terminus
sp_v3.0_unigene155605 SustainPine v3.0 269
• AutoFact: 50S ribosomal protein L5 n=3 Tax=Flavobacteriales RepID=RL5_FLAJ1 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L5 8.12e-30
Putative C-terminus
sp_v3.0_unigene155650 SustainPine v3.0 333
• AutoFact: Ribosomal protein S4, putative n=2 Tax=Plasmodium (Vinckeia) RepID=Q4Z002_PLABA 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nucleolar ribonucleoprotein U3 component 6.335e-06
Putative N-terminus
sp_v3.0_unigene155667 SustainPine v3.0 558
• AutoFact: 50S ribosomal protein L1 n=34 Tax=Pseudomonas RepID=RL1_PSE14 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 1.26e-38
Internal
sp_v3.0_unigene155689 SustainPine v3.0 372
• AutoFact: 40S ribosomal protein S4, X isoform, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LEI2_9ALVE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.955e-24
N-terminus
sp_v3.0_unigene155714 SustainPine v3.0 356
• AutoFact: 40S ribosomal protein S18, putative n=4 Tax=Chromadorea RepID=A8Q9C4_BRUMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 5.686e-12
N-terminus
sp_v3.0_unigene155907 SustainPine v3.0 251
• AutoFact: U3 small nucleolar ribonucleoprotein protein IMP3 p n=1 Tax=Albugo laibachii Nc14 RepID=F0W7J4_9STRA 8.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein-like 1.666e-06
Putative C-terminus
sp_v3.0_unigene155957 SustainPine v3.0 453
• AutoFact: Ribosomal protein L37 n=1 Tax=Adineta ricciae RepID=Q56J85_ADIRI 3.0e-36
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene155963 SustainPine v3.0 384
• AutoFact: Ribosomal protein rpl12 n=1 Tax=Eurythoe complanata RepID=A8UG21_EURCO 6.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.375e-15
C-terminus
sp_v3.0_unigene156011 SustainPine v3.0 287
• AutoFact: 40S ribosomal protein S9 (Fragment) n=1 Tax=Cyanophora paradoxa RepID=Q9SCG0_CYAPA 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.2039e-45
C-terminus
sp_v3.0_unigene156016 SustainPine v3.0 435
• AutoFact: Probable 40S ribosomal protein S9 n=16 Tax=Trypanosomatidae RepID=RS9_TRYBB 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 7.187e-37
C-terminus
sp_v3.0_unigene156019 SustainPine v3.0 125
• AutoFact: RS9, ribosomal protein 9 n=1 Tax=Thalassiosira pseudonana RepID=B8C1H2_THAPS 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.144e-30
Putative N-terminus
sp_v3.0_unigene156083 SustainPine v3.0 263
• AutoFact: 40S ribosomal protein S11, putative n=5 Tax=Eukaryota RepID=C9ZIN6_TRYB9 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.361e-32
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain