Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene152390 SustainPine v3.0 461
• AutoFact: 40S ribosomal protein S4 n=2 Tax=Ixodoidea RepID=RS4_IXOSC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.563e-24
C-terminus
sp_v3.0_unigene152449 SustainPine v3.0 250
• AutoFact: S18 n=1 Tax=Suberites domuncula RepID=Q4KTC3_SUBDO 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 5.105e-12
Putative C-terminus
sp_v3.0_unigene152450 SustainPine v3.0 354
• AutoFact: PREDICTED: similar to ribosomal protein S18 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI00005875AC 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.938e-12
C-terminus
sp_v3.0_unigene152481 SustainPine v3.0 485
• AutoFact: Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Chlamydomonadales RepID=A8JGF8_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.035e-36
N-terminus
sp_v3.0_unigene152573 SustainPine v3.0 516
• AutoFact: ribosomal protein S9 [Lysiphlebus testaceipes] gb|AAX62466.1| ribosomal protein S9 variant 1 [Lysiphlebus testaceipes] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 3.78351e-44
N-terminus
sp_v3.0_unigene152716 SustainPine v3.0 416
• AutoFact: PREDICTED: similar to ribosomal protein S11-2 isoform 1 [Tribolium castaneum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 5.702e-28
C-terminus
sp_v3.0_unigene152803 SustainPine v3.0 318
• AutoFact: PREDICTED: ribosomal protein L23a-like [Bos taurus] 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 1.967e-10
C-terminus
sp_v3.0_unigene152848 SustainPine v3.0 316
• AutoFact: 60S ribosomal protein L5 n=1 Tax=Puccinia graminis f. sp. tritici CRL 75-36-700-3 RepID=E3JUJ9_PUCGT 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 2.554e-11
C-terminus
sp_v3.0_unigene152857 SustainPine v3.0 257
• AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Myxine glutinosa RepID=Q86LW7_MYXGL 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 7.321e-17
Internal
sp_v3.0_unigene152885 SustainPine v3.0 356
• AutoFact: Ribosomal protein L2 n=1 Tax=Ochromonas danica RepID=Q9G918_OCHDN 1.0e-17
• FL-Next: sp=50S ribosomal protein L2, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein L2 2.117e-24
Putative C-terminus
sp_v3.0_unigene152954 SustainPine v3.0 351
• AutoFact: Ribosomal protein L11 (Fragment) n=1 Tax=Crassostrea gigas RepID=Q70MM1_CRAGI 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 3.69e-11
C-terminus
sp_v3.0_unigene152981 SustainPine v3.0 304
• AutoFact: ribosomal protein S18 [Xenopus laevis] gb|AAH68873.1| MGC82306 protein [Xenopus laevis] 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 6.749e-12
Putative C-terminus
sp_v3.0_unigene153062 SustainPine v3.0 483
• AutoFact: 60S ribosomal protein L11 [Neurospora crassa OR74A] sp|Q7RVN0.2|RL11_NEUCR RecName: Full=60S ribosomal protein L11 gb|EAA36404.2| 60S ribosomal protein L11 [Neurospora crassa OR74A] gb|EGO53163.1| 60S ribosomal protein L11 [Neurospora tetrasperma FGSC 250 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 2.963e-11
N-terminus
sp_v3.0_unigene153105 SustainPine v3.0 505
• AutoFact: 40S ribosomal protein S18 n=24 Tax=Eukaryota RepID=RS18_SPOFR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 8.064e-12
Putative Complete
sp_v3.0_unigene153218 SustainPine v3.0 230
• AutoFact: 60S ribosomal protein L12 n=3 Tax=Schizosaccharomyces RepID=RL12_SCHPO 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 2.445e-11
C-terminus
sp_v3.0_unigene153231 SustainPine v3.0 302
• AutoFact: putative ribosomal protein L12e [Maconellicoccus hirsutus] 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 8.412e-15
Internal
sp_v3.0_unigene153243 SustainPine v3.0 335
• AutoFact: 50S ribosomal protein L20 n=1 Tax=Leadbetterella byssophila DSM 17132 RepID=E4RTL9_LEAB4 2.0e-29
• FL-Next: sp=50S ribosomal protein L20; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L20 1.598e-17
N-terminus
sp_v3.0_unigene153248 SustainPine v3.0 347
• AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 9.80909e-45
C-terminus
sp_v3.0_unigene153253 SustainPine v3.0 522
• AutoFact: Ribosomal protein S11-2 n=3 Tax=Endopterygota RepID=A2IAD8_9NEOP 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 2.873e-24
Complete
sp_v3.0_unigene153271 SustainPine v3.0 396
• AutoFact: 60S ribosomal protein L12-1 n=6 Tax=Arabidopsis RepID=RL121_ARATH 4.2039e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.708e-19
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain