Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene151721 SustainPine v3.0 548
• AutoFact: 30S ribosomal protein S4 n=4 Tax=Mycobacterium RepID=RS4_MYCGI 0.0
• FL-Next: sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
C-terminus
sp_v3.0_unigene151729 SustainPine v3.0 471
• AutoFact: 30S ribosomal protein S13 n=3 Tax=Rhodocyclaceae RepID=RS13_AROAE 0.0
• FL-Next: sp=30S ribosomal protein S13, chloroplastic; Rhodomonas salina (Cryptomonas salina). Plastid; Chloroplast. 0.0
• Sma3: 30S ribosomal protein S13, chloroplastic 6.384e-29
Complete
sp_v3.0_unigene151743 SustainPine v3.0 387
• AutoFact: 60S ribosomal protein L11 n=3 Tax=Schizosaccharomyces RepID=RL11_SCHPO 8.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 3.69e-11
C-terminus
sp_v3.0_unigene151747 SustainPine v3.0 277
• AutoFact: Ribosomal protein L37 n=1 Tax=Adineta ricciae RepID=Q56J85_ADIRI 3.0e-25
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Putative Complete
sp_v3.0_unigene151873 SustainPine v3.0 262
• AutoFact: 60S ribosomal protein L23a n=1 Tax=Daucus carota RepID=RL23A_DAUCA 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.918e-10
Putative C-terminus
sp_v3.0_unigene151886 SustainPine v3.0 504
• AutoFact: 40S ribosomal protein S4, putative n=1 Tax=Brugia malayi RepID=A8NNZ4_BRUMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.176e-20
C-terminus
sp_v3.0_unigene151898 SustainPine v3.0 554
• AutoFact: Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp n=2 Tax=Pichia pastoris RepID=C4R8K3_PICPG 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L11 3.69e-11
Complete
sp_v3.0_unigene151947 SustainPine v3.0 434
• AutoFact: S9 ribosomal protein n=2 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CJK3_9EUKA 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.68156e-44
C-terminus
sp_v3.0_unigene152006 SustainPine v3.0 152
• AutoFact: RPS18.A-like protein n=1 Tax=Liriodendron tulipifera RepID=D9YT75_LIRTU 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 2.723e-12
N-terminus
sp_v3.0_unigene152026 SustainPine v3.0 318
• AutoFact: Ribosomal protein L37 n=1 Tax=Micromonas sp. RCC299 RepID=C1E0E5_MICSR 2.0e-33
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Putative Complete
sp_v3.0_unigene152036 SustainPine v3.0 253
• AutoFact: PREDICTED: 40S ribosomal protein S18-like isoform 1 n=1 Tax=Nomascus leucogenys RepID=UPI00020AD7D1 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.938e-12
Putative C-terminus
sp_v3.0_unigene152068 SustainPine v3.0 363
• AutoFact: 30S ribosomal protein S12 n=24 Tax=Proteobacteria RepID=RS12_AROAE 0.0
• FL-Next: sp=30S ribosomal protein S12, chloroplastic; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: Cyanelle 30S ribosomal protein S12 0.0
C-terminus
sp_v3.0_unigene152071 SustainPine v3.0 207
• AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.799e-26
Putative N-terminus
sp_v3.0_unigene152129 SustainPine v3.0 307
• AutoFact: PREDICTED: ribosomal protein L12-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBC093 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.917e-19
Internal
sp_v3.0_unigene152133 SustainPine v3.0 397
• AutoFact: 60S ribosomal protein L23, putative n=1 Tax=Babesia bovis RepID=A7AME1_BABBO 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 1.919e-10
C-terminus
sp_v3.0_unigene152152 SustainPine v3.0 211
• AutoFact: 40S ribosomal protein S4 n=1 Tax=Aedes aegypti RepID=Q5QC96_AEDAE 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 7.033e-21
Internal
sp_v3.0_unigene152159 SustainPine v3.0 469
• AutoFact: Ribosomal protein L37 n=1 Tax=Branchiostoma floridae RepID=C3YCM1_BRAFL 3.0e-28
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene152174 SustainPine v3.0 413
• AutoFact: 30S ribosomal protein S13 n=18 Tax=Xanthomonadaceae RepID=RS13_XANC5 8.40779e-45
• FL-Next: sp=Cyanelle 30S ribosomal protein S13; Cyanophora paradoxa. Plastid; Cyanelle. 0.0
Complete
sp_v3.0_unigene152306 SustainPine v3.0 298
• AutoFact: Ribosomal protein L37 n=1 Tax=Zea mays RepID=B6SJJ8_MAIZE 7.0e-29
• FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L37 0.0
Putative Complete
sp_v3.0_unigene152369 SustainPine v3.0 253
• AutoFact: Ribosomal protein rpl12 n=1 Tax=Lineus viridis RepID=B0Z9L6_9BILA 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.708e-19
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain