Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA replication

Term: GO:0006260  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene48324 SustainPine v3.0 455
AutoFact: DNA primase [Arabidopsis thaliana] gb|AED96261.1| DNA primase [Arabidopsis thaliana] 9.0e-32
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Internal
sp_v3.0_unigene48449 SustainPine v3.0 1004
AutoFact: origin recognition complex subunit 3 [Zea mays] gb|AAL10454.1|AF417483_1 origin recognition complex subunit 3 [Zea mays] 9.0e-27
FL-Next: tr=Origin recognition complex subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
C-terminus
sp_v3.0_unigene48501 SustainPine v3.0 369
AutoFact: AAA-type ATPase-like protein [Arabidopsis thaliana] gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana] gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] gb|AEC05585.1| AAA-type ATPase-like protein [Arabidop 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Replication factor C / DNA polymerase III gamma-tau subunit, putative 1.433e-07
Internal
sp_v3.0_unigene48829 SustainPine v3.0 213
AutoFact: DNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SJG5_SELML 1.0e-18
FL-Next: sp=DNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: DNA polymerase 1.32e-23
Internal
sp_v3.0_unigene49149 SustainPine v3.0 192
AutoFact: DNA polymerase theta, putative n=1 Tax=Ricinus communis RepID=B9RS63_RICCO 2.0e-17
FL-Next: tr=DNA polymerase theta, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene49475 SustainPine v3.0 161
AutoFact: putative DNA polymerase alpha subunit [Arabidopsis thaliana] 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene49946 SustainPine v3.0 278
AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 2.0e-13
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50055 SustainPine v3.0 401
AutoFact: DNA polymerase alpha catalytic subunit n=1 Tax=Arabidopsis thaliana RepID=F4K285_ARATH 1.0e-30
FL-Next: sp=DNA polymerase alpha catalytic subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA polymerase alpha catalytic subunit 2.258e-09
Internal
sp_v3.0_unigene50719 SustainPine v3.0 195
AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 8.0e-20
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.911e-13
Internal
sp_v3.0_unigene50948 SustainPine v3.0 193
AutoFact: DNA polymerase theta subunit [Arabidopsis thaliana] dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] 9.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene51208 SustainPine v3.0 343
AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 4.99997e-41
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene51229 SustainPine v3.0 260
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-40 repeat-containing protein MSI1 4.959e-09
Internal
sp_v3.0_unigene51918 SustainPine v3.0 272
AutoFact: Replication factor C / DNA polymerase III gamma-tau subunit, putative n=1 Tax=Ricinus communis RepID=B9S8E5_RICCO 2.0e-18
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene51920 SustainPine v3.0 401
AutoFact: Helicase n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9BW99_9EUKA 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene51997 SustainPine v3.0 344
AutoFact: DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] gb|AEE28356.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene52278 SustainPine v3.0 482
AutoFact: Unassigned protein 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene52430 SustainPine v3.0 380
AutoFact: Ribonucleoside-diphosphate reductase R2 (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q5YJM7_HYAOR 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleotide reductase small subunit 2.381e-12
N-terminus
sp_v3.0_unigene52446 SustainPine v3.0 273
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene52659 SustainPine v3.0 157
AutoFact: DNA primase [Arabidopsis thaliana] gb|AAU44591.1| hypothetical protein AT5G52800 [Arabidopsis thaliana] gb|AED96262.1| DNA primase [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene52759 SustainPine v3.0 120
AutoFact: FACT complex subunit SPT16 n=4 Tax=Camelineae RepID=SPT16_ARATH 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.05e-13
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain