Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA replication

Term: GO:0006260  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene158177 SustainPine v3.0 214
• AutoFact: DNA polymerase delta subunit 2 [Arabidopsis thaliana] sp|O48520.2|DPOD2_ARATH RecName: Full=DNA polymerase delta small subunit gb|AAM97084.1| putative DNA polymerase delta small subunit [Arabidopsis thaliana] gb|AAP49515.1| At2g42120 [Arabidopsis thaliana 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene159346 SustainPine v3.0 204
• AutoFact: replication factor C (activator 1) 5 [Bombyx mori] gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene159645 SustainPine v3.0 218
• AutoFact: MSI type nucleosome/chromatin assembly factor C (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00YD9_OSTTA 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-40 repeat-containing protein MSI1 6.427e-09
Internal
sp_v3.0_unigene160203 SustainPine v3.0 336
• AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 1.0e-33
• FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
• Sma3: Recombination signal sequence recognition protein 1 4.031e-17
Internal
sp_v3.0_unigene161521 SustainPine v3.0 172
• AutoFact: AAA-type ATPase family protein n=2 Tax=Arabidopsis thaliana RepID=F4JRP0_ARATH 3.0e-16
• FL-Next: tr=Putative uncharacterized protein AT4g18820; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene161858 SustainPine v3.0 328
• AutoFact: replication factor A1 [Arabidopsis thaliana] gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana] dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana] gb|AAO64881.1| At2g06510 [Arabidopsis thaliana] gb|AEC06010.1| replic 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene162373 SustainPine v3.0 314
• AutoFact: DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA 5.0e-16
• FL-Next: sp=DNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: DNA polymerase 7.927e-21
Internal
sp_v3.0_unigene162673 SustainPine v3.0 452
• AutoFact: DNA ligase n=1 Tax=Sorghum bicolor RepID=C5WXG6_SORBI 3.0e-23
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
• Sma3: DNA ligase 8.098e-11
Internal
sp_v3.0_unigene163333 SustainPine v3.0 241
• AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome/chromatin assembly factor group 6.675e-10
Internal
sp_v3.0_unigene163357 SustainPine v3.0 452
• AutoFact: DNA polymerase n=1 Tax=Ricinus communis RepID=B9RPS7_RICCO 2.0e-07
• FL-Next: sp=DNA polymerase delta catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA polymerase delta catalytic subunit 3.244e-13
Internal
sp_v3.0_unigene163686 SustainPine v3.0 141
• AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-40 repeat-containing protein MSI1 4.755e-09
Internal
sp_v3.0_unigene164252 SustainPine v3.0 294
• AutoFact: DNA ligase n=1 Tax=Ricinus communis RepID=B9SPY8_RICCO 1.0e-14
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Internal
sp_v3.0_unigene164794 SustainPine v3.0 291
• AutoFact: DNA replication ATP-dependent helicase Dna2 n=3 Tax=Arabidopsis thaliana RepID=F4HXR6_ARATH 1.0e-21
• FL-Next: tr=DNA replication helicase dna2, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene164857 SustainPine v3.0 288
• AutoFact: DNA polymerase alpha 2 [Arabidopsis thaliana] gb|AEE34673.1| DNA polymerase alpha 2 [Arabidopsis thaliana] 6.0e-17
• FL-Next: tr=DNA polymerase alpha subunit B family; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene165741 SustainPine v3.0 223
• AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 4.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome/chromatin assembly factor group 1.937e-09
Internal
sp_v3.0_unigene166091 SustainPine v3.0 365
• AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 7.0e-40
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene166676 SustainPine v3.0 408
• AutoFact: FACT complex subunit SSRP1 n=1 Tax=Catharanthus roseus RepID=SSRP1_CATRO 3.0e-10
• FL-Next: sp=FACT complex subunit SSRP1; Catharanthus roseus (Madagascar periwinkle) (Vinca rosea). 0.0
• Sma3: Recombination signal sequence recognition protein 1 1.217e-12
Internal
sp_v3.0_unigene167357 SustainPine v3.0 195
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene183939 SustainPine v3.0 386
• AutoFact: DNA polymerase n=1 Tax=Populus trichocarpa RepID=B9MYH6_POPTR 2.0e-25
• FL-Next: sp=DNA polymerase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: DNA polymerase 1.235e-20
N-terminus
sp_v3.0_unigene184081 SustainPine v3.0 606
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain