Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA replication

Term: GO:0006260  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene112350 SustainPine v3.0 180
AutoFact: putative DNA polymerase alpha subunit [Arabidopsis thaliana] 5.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene112806 SustainPine v3.0 381
AutoFact: Replication factor C large subunit (Fragment) n=2 Tax=Poaceae RepID=Q8L6A5_9POAL 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene113406 SustainPine v3.0 240
AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 9.0e-21
FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.911e-13
Internal
sp_v3.0_unigene114260 SustainPine v3.0 486
AutoFact: FACT complex subunit SPT16 [Zea mays] sp|Q8H6B1.1|SPT16_MAIZE RecName: Full=FACT complex subunit SPT16; AltName: Full=Facilitates chromatin transcription complex subunit SPT16; AltName: Full=Global transcription factor group C protein 102 gb|AAN41252.1| g 2.0e-23
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Global transcription factor group 2.57e-10
N-terminus
sp_v3.0_unigene115326 SustainPine v3.0 322
AutoFact: DNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U238_VITVI 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: DNA polymerase 1.204e-09
Internal
sp_v3.0_unigene118130 SustainPine v3.0 299
AutoFact: FACT complex subunit SPT16 n=4 Tax=Oryza sativa RepID=SPT16_ORYSJ 1.0e-20
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.783e-09
Internal
sp_v3.0_unigene119827 SustainPine v3.0 224
AutoFact: FACT complex subunit SPT16, putative n=1 Tax=Ricinus communis RepID=B9RFP6_RICCO 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 6.203e-13
Internal
sp_v3.0_unigene120682 SustainPine v3.0 451
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene121256 SustainPine v3.0 392
AutoFact: DNA ligase n=1 Tax=Oryza sativa Japonica Group RepID=B9EYN2_ORYSJ 2.0e-15
FL-Next: sp=DNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene121512 SustainPine v3.0 172
AutoFact: DNA polymerase theta subunit [Arabidopsis thaliana] dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] 8.0e-11
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene123665 SustainPine v3.0 291
AutoFact: DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] gb|AEE28356.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene124006 SustainPine v3.0 409
AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 7.0e-28
FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Sma3: DNA ligase 2.193e-16
C-terminus
sp_v3.0_unigene124793 SustainPine v3.0 289
AutoFact: AAA-type ATPase-like protein [Arabidopsis thaliana] gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana] gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] gb|AEC05585.1| AAA-type ATPase-like protein [Arabidop 1.0e-20
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Replication factor C / DNA polymerase III gamma-tau subunit, putative 7.127e-14
Internal
sp_v3.0_unigene125766 SustainPine v3.0 241
AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 1.0e-23
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 3.617e-10
Internal
sp_v3.0_unigene125790 SustainPine v3.0 258
AutoFact: DNA polymerase n=3 Tax=Selaginella moellendorffii RepID=D8RZN4_SELML 3.0e-25
FL-Next: sp=DNA polymerase delta catalytic subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA polymerase 2.851e-12
Internal
sp_v3.0_unigene126189 SustainPine v3.0 382
AutoFact: DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] gb|AEE28356.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] 6.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene126569 SustainPine v3.0 1318
AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.48e-09
Complete
sp_v3.0_unigene126974 SustainPine v3.0 1471
AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative replication factor A 1.122e-08
Complete
sp_v3.0_unigene127496 SustainPine v3.0 532
AutoFact: Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB 2.0e-27
FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Eukaryotic translation initiation factor 5A 4.053e-27
Putative Complete
sp_v3.0_unigene128334 SustainPine v3.0 522
AutoFact: DNA replication ATP-dependent helicase Dna2 n=3 Tax=Arabidopsis thaliana RepID=F4HXR6_ARATH 3.0e-24
FL-Next: tr=DNA replication ATP-dependent helicase Dna2; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain