Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA replication

Term: GO:0006260  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene94757 SustainPine v3.0 846
AutoFact: Snm1 n=4 Tax=Oryza sativa RepID=Q5NSW7_ORYSJ 0.0
FL-Next: sp=DNA cross-link repair protein SNM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA cross-link repair protein pso2/snm1, putative 1.967e-08
Internal
sp_v3.0_unigene94848 SustainPine v3.0 762
AutoFact: toprim domain-containing protein [Arabidopsis thaliana] gb|ACI49800.1| At1g30680 [Arabidopsis thaliana] gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene95100 SustainPine v3.0 378
AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 5.0e-27
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene99198 SustainPine v3.0 557
AutoFact: RPA 70kDa subunit [Pisum sativum] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene99664 SustainPine v3.0 486
AutoFact: origin recognition complex subunit 2 [Arabidopsis thaliana] sp|Q38899.1|ORC2_ARATH RecName: Full=Origin recognition complex subunit 2 gb|AAC49131.1| atOrc2p [Arabidopsis thaliana] gb|AAC23627.1| origin recognition complex protein [Arabidopsis thaliana] gb 1.0e-25
FL-Next: sp=Origin recognition complex subunit 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene99873 SustainPine v3.0 271
AutoFact: DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana] 6.0e-28
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: DNA polymerase epsilon subunit B-like protein 3.441e-09
Internal
sp_v3.0_unigene100046 SustainPine v3.0 462
AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 2.0e-33
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 3.677e-13
Internal
sp_v3.0_unigene100630 SustainPine v3.0 240
AutoFact: DNA polymerase delta small subunit n=5 Tax=Poaceae RepID=DPOD2_ORYSJ 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA polymerase delta small subunit 3.441e-09
Internal
sp_v3.0_unigene101313 SustainPine v3.0 895
AutoFact: Replication factor C / DNA polymerase III gamma-tau subunit, putative n=1 Tax=Ricinus communis RepID=B9S8E5_RICCO 9.0e-21
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene102127 SustainPine v3.0 1005
AutoFact: DNA polymerase delta subunit 2 [Arabidopsis thaliana] gb|AEC10073.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA polymerase delta small subunit 8.721e-14
C-terminus
sp_v3.0_unigene103926 SustainPine v3.0 252
AutoFact: polymerase gamma 1 [Arabidopsis thaliana] gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana] dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana] dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana] gb|AEE76392.1| polyme 2.0e-18
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene104028 SustainPine v3.0 470
AutoFact: DNA primase [Arabidopsis thaliana] gb|AAU44591.1| hypothetical protein AT5G52800 [Arabidopsis thaliana] gb|AED96262.1| DNA primase [Arabidopsis thaliana] 9.0e-37
FL-Next: tr=Defensin/CCP-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene104400 SustainPine v3.0 331
AutoFact: DNA polymerase epsilon subunit B, putative n=1 Tax=Ricinus communis RepID=B9SYF4_RICCO 2.0e-27
FL-Next: tr=DNA polymerase epsilon subunit B, putative; Ricinus communis (Castor bean). 0.0
Sma3: DNA polymerase epsilon subunit B-like protein 4.503e-09
Internal
sp_v3.0_unigene105010 SustainPine v3.0 762
AutoFact: origin recognition complex3 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene106574 SustainPine v3.0 443
AutoFact: DNA polymerase n=2 Tax=Oryza sativa RepID=Q6K777_ORYSJ 0.0
FL-Next: sp=DNA polymerase; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: DNA polymerase 4.748e-35
Internal
sp_v3.0_unigene106948 SustainPine v3.0 410
AutoFact: DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] gb|AEE28356.1| DNA replication ATP-dependent helicase Dna2 [Arabidopsis thaliana] 4.0e-28
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene107256 SustainPine v3.0 371
AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 8.0e-29
FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
Sma3: Global transcription factor group 2.502e-10
Internal
sp_v3.0_unigene108538 SustainPine v3.0 474
AutoFact: DNA primase [Arabidopsis thaliana] gb|AED96261.1| DNA primase [Arabidopsis thaliana] 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene111126 SustainPine v3.0 327
AutoFact: DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA 8.00001e-42
FL-Next: sp=DNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: DNA polymerase 2.079e-26
Internal
sp_v3.0_unigene111469 SustainPine v3.0 241
AutoFact: Aprataxin, putative n=1 Tax=Ricinus communis RepID=B9SWY0_RICCO 3.0e-15
FL-Next: sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain