Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: transcription initiation, DNA-dependent

Term: GO:0006352  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene109765 SustainPine v3.0 181
• AutoFact: Queuine tRNA-ribosyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TIB7_PHYPA 2.0e-15
• FL-Next: sp=Queuine tRNA-ribosyltransferase; Zea mays (Maize). 0.0
• Sma3: Queuine tRNA-ribosyltransferase 1.787e-26
Internal
sp_v3.0_unigene110045 SustainPine v3.0 292
• AutoFact: TFIIB-related protein (Fragment) n=2 Tax=Andropogoneae RepID=Q93WQ2_MAIZE 1.0e-36
• FL-Next: tr=TFIIB-related protein, putative, expressed; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: TFIIB-related protein 3.176e-13
Putative N-terminus
sp_v3.0_unigene110631 SustainPine v3.0 211
• AutoFact: transcription factor IIB (ISS) [Ostreococcus tauri] emb|CAL56498.1| transcription factor IIB (ISS) [Ostreococcus tauri] 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene127109 SustainPine v3.0 770
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: PAF1 complex component 1.649e-08
C-terminus
sp_v3.0_unigene127679 SustainPine v3.0 781
• AutoFact: RecName: Full=Transcription initiation factor IIB; AltName: Full=General transcription factor TFIIB gb|AAB09756.1| transcription factor TFIIB [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription initiation factor iib, putative 6.241e-12
C-terminus
sp_v3.0_unigene127932 SustainPine v3.0 1147
• AutoFact: Transcription initiation factor IIB n=7 Tax=Poaceae RepID=TF2B_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription initiation factor iib, putative 1.301e-11
C-terminus
sp_v3.0_unigene148137 SustainPine v3.0 490
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 3.00004e-41
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: RNA-directed DNA polymerase (Reverse transcriptase) 9.831e-10
Putative N-terminus
sp_v3.0_unigene150135 SustainPine v3.0 411
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nematostella vectensis RepID=A7RVV5_NEMVE 8.00001e-41
• FL-Next: sp=Putative ubiquitin carboxyl-terminal hydrolase 11; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 9.447e-27
Internal
sp_v3.0_unigene154461 SustainPine v3.0 444
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nematostella vectensis RepID=A7RVV5_NEMVE 2.0e-34
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 3.963e-25
Putative C-terminus
sp_v3.0_unigene157050 SustainPine v3.0 460
• AutoFact: Eukaryotic initiation factor 3e n=3 Tax=Oryza sativa RepID=A0MLT8_ORYSJ 0.0
• FL-Next: sp=Eukaryotic translation initiation factor 3 subunit E; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative eukaryotic translation initiation factor 3E 4.33842e-42
Internal
sp_v3.0_unigene158069 SustainPine v3.0 453
• AutoFact: PREDICTED: eukaryotic translation initiation factor 3, subunit 6 48kDa-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBA752 0.0
• FL-Next: sp=Eukaryotic translation initiation factor 3 subunit E; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene158564 SustainPine v3.0 209
• AutoFact: Related to TAF9-TFIID and SAGA subunit n=1 Tax=Sporisorium reilianum RepID=E6ZWG6_9BASI 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene158590 SustainPine v3.0 370
• AutoFact: RNA polymerase sigma factor rpoS n=10 Tax=Pseudomonas RepID=RPOS_PSEAE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA polymerase sigma factor 8.307e-20
Internal
sp_v3.0_unigene158640 SustainPine v3.0 482
• AutoFact: Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Nematostella vectensis RepID=EIF3E_NEMVE 0.0
• FL-Next: sp=Eukaryotic translation initiation factor 3 subunit E; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative eukaryotic translation initiation factor 3E 1.055e-34
Putative C-terminus
sp_v3.0_unigene164104 SustainPine v3.0 341
• AutoFact: Queuine tRNA-ribosyltransferase n=4 Tax=Poaceae RepID=Q6K4A3_ORYSJ 6.02558e-44
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Queuine tRNA-ribosyltransferase 2.804e-34
N-terminus
sp_v3.0_unigene167739 SustainPine v3.0 274
• AutoFact: Paf1 complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S430_PHYPA 4.0e-10
• FL-Next: tr=Paf1 complex protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: PAF1 complex component 1.592e-08
C-terminus
sp_v3.0_unigene188975 SustainPine v3.0 546
• AutoFact: PREDICTED: eukaryotic translation initiation factor 3, subunit 6 48kDa-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBA752 0.0
• FL-Next: sp=Eukaryotic translation initiation factor 3 subunit E; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative eukaryotic translation initiation factor 3E 5.32e-12
C-terminus
sp_v3.0_unigene192794 SustainPine v3.0 503
• AutoFact: PREDICTED: eukaryotic translation initiation factor 3, subunit E n=1 Tax=Taeniopygia guttata RepID=UPI000194BF1D 5.0e-30
• FL-Next: sp=Eukaryotic translation initiation factor 3 subunit E; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain