Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: chromatin assembly or disassembly

Term: GO:0006333  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene148468 SustainPine v3.0 213
AutoFact: OSJNBa0004L19.22 protein n=1 Tax=Oryza sativa RepID=Q5JPZ2_ORYSA 7.0e-15
FL-Next: tr=OSJNBa0004L19.22 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.682e-08
Internal
sp_v3.0_unigene148496 SustainPine v3.0 355
AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 3.00018e-42
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative N-terminus
sp_v3.0_unigene148545 SustainPine v3.0 231
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene148588 SustainPine v3.0 383
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q5W703_ORYSJ 1.0e-23
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.327e-32
Putative N-terminus
sp_v3.0_unigene148649 SustainPine v3.0 344
AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 4.00001e-40
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Pol protein integrase region 2.24208e-44
Internal
sp_v3.0_unigene148698 SustainPine v3.0 398
AutoFact: Chromo domain containing protein 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene148764 SustainPine v3.0 109
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Orobanche cernua var. cumana RepID=Q27U10_OROCE 2.0e-08
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Reverse transcriptase 2.8026e-45
Internal
sp_v3.0_unigene148797 SustainPine v3.0 289
AutoFact: OSIGBa0118P15.5 protein n=1 Tax=Oryza sativa RepID=Q01KK6_ORYSA 2.0e-12
FL-Next: tr=OSIGBa0118P15.5 protein; Oryza sativa (Rice). 0.0
Internal
sp_v3.0_unigene148873 SustainPine v3.0 186
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Internal
sp_v3.0_unigene148931 SustainPine v3.0 430
AutoFact: Putative reverse transcriptase n=1 Tax=Oryza sativa Japonica Group RepID=Q75H53_ORYSJ 5.0e-25
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.093e-10
Internal
sp_v3.0_unigene148980 SustainPine v3.0 160
AutoFact: Integrase (Fragment) n=1 Tax=Gossypium herbaceum RepID=Q7XYU5_GOSHE 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene148982 SustainPine v3.0 357
AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 4.0e-22
FL-Next: tr=Retrotransposon protein; Beta vulgaris (Sugar beet). 0.0
Internal
sp_v3.0_unigene148989 SustainPine v3.0 174
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.502e-14
Putative Complete
sp_v3.0_unigene149040 SustainPine v3.0 332
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.753e-14
Internal
sp_v3.0_unigene149103 SustainPine v3.0 346
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.22e-36
Putative Complete
sp_v3.0_unigene149131 SustainPine v3.0 245
AutoFact: zinc finger protein [Arabidopsis thaliana] 8.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ran GTPase binding protein, putative 2.006e-22
Putative C-terminus
sp_v3.0_unigene149141 SustainPine v3.0 158
AutoFact: Unassigned protein
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.292e-24
Internal
sp_v3.0_unigene149155 SustainPine v3.0 291
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=7 Tax=Poaceae RepID=Q10IG2_ORYSJ 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene149165 SustainPine v3.0 257
AutoFact: pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) 1.0e-17
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.952e-07
Putative C-terminus
sp_v3.0_unigene149166 SustainPine v3.0 242
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2R2N6_ORYSJ 3.0e-15
FL-Next: tr=Putative uncharacterized protein P0001A07.10; Oryza sativa subsp. japonica (Rice). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain