Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin assembly or disassembly

Term: GO:0006333  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene60065 SustainPine v3.0 267
• AutoFact: rve domain containing protein 2.0e-07
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Gag-Pol polyprotein 1.305e-09
Putative C-terminus
sp_v3.0_unigene60076 SustainPine v3.0 274
• AutoFact: Putative 22 kDa kafirin cluster; Ty3-Gypsy type n=2 Tax=Oryza sativa RepID=Q7G6A5_ORYSJ 8.0e-22
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.733e-30
Internal
sp_v3.0_unigene60088 SustainPine v3.0 453
• AutoFact: OSIGBa0118P15.5 protein n=1 Tax=Oryza sativa RepID=Q01KK6_ORYSA 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene60232 SustainPine v3.0 332
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q94LP8_ORYSJ 1.0e-17
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Internal
sp_v3.0_unigene60250 SustainPine v3.0 378
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene60302 SustainPine v3.0 375
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 2.0e-31
• FL-Next: tr=Putative retroelement pol polyprotein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pol protein integrase region 8.071e-25
Internal
sp_v3.0_unigene60372 SustainPine v3.0 363
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=5 Tax=Oryza sativa RepID=Q2R1L3_ORYSJ 2.0e-28
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene60400 SustainPine v3.0 428
• AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 3.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HAT family dimerisation domain containing protein 2.017e-07
Internal
sp_v3.0_unigene60434 SustainPine v3.0 383
• AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 1.381e-31
Putative Complete
sp_v3.0_unigene60459 SustainPine v3.0 136
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 1.0e-07
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.057e-10
Internal
sp_v3.0_unigene60480 SustainPine v3.0 395
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 4.0e-30
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene60525 SustainPine v3.0 207
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 2.0e-12
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene60597 SustainPine v3.0 189
• AutoFact: Pol protein integrase region (Fragment) n=4 Tax=Picea abies RepID=Q9M6S7_PICAB 3.0e-14
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Pol protein integrase region 3.204e-08
Internal
sp_v3.0_unigene60623 SustainPine v3.0 365
• AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 6.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene60642 SustainPine v3.0 454
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QPZ1_ORYSJ 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.005e-37
Putative Complete
sp_v3.0_unigene60745 SustainPine v3.0 210
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.441e-32
Putative Complete
sp_v3.0_unigene60752 SustainPine v3.0 357
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene60981 SustainPine v3.0 248
• AutoFact: Reverse transcriptase (Fragment) n=3 Tax=Eleocharis cellulosa RepID=D5LVM7_9POAL 1.0e-28
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Internal
sp_v3.0_unigene61035 SustainPine v3.0 228
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 3.0e-19
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 8.754e-11
Putative C-terminus
sp_v3.0_unigene61073 SustainPine v3.0 229
• AutoFact: polyprotein [Solanum lycopersicum] 5.0e-13
• FL-Next: tr=Disease resistance protein; pekinensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain