Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin binding

Term: GO:0003682  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene37050 SustainPine v3.0 591
• AutoFact: putative receptor protein kinase PERK1 [Glycine max] gb|ACM89502.1| PERK1-like protein kinase [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP binding protein, putative 3.236e-12
Internal
sp_v3.0_unigene37908 SustainPine v3.0 720
• AutoFact: High mobility group family n=1 Tax=Populus trichocarpa RepID=B9H5J0_POPTR 6.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HMG1/2-like protein 1.445e-17
Putative C-terminus
sp_v3.0_unigene38172 SustainPine v3.0 4174
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 6.04e-08
Complete
sp_v3.0_unigene38265 SustainPine v3.0 5296
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene38420 SustainPine v3.0 851
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 8.299e-07
Internal
sp_v3.0_unigene38467 SustainPine v3.0 1215
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.80909e-45
N-terminus
sp_v3.0_unigene38620 SustainPine v3.0 3950
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.543e-10
Putative Complete
sp_v3.0_unigene38670 SustainPine v3.0 1656
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene38992 SustainPine v3.0 256
• AutoFact: Unassigned protein 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene39017 SustainPine v3.0 614
• AutoFact: ATP-binding cassette transporter n=1 Tax=Selaginella moellendorffii RepID=D8RLA4_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
N-terminus
sp_v3.0_unigene39033 SustainPine v3.0 981
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Internal
sp_v3.0_unigene39156 SustainPine v3.0 531
• AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AEC10493.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromatin remodeling complex subunit 2.515e-10
Internal
sp_v3.0_unigene39985 SustainPine v3.0 326
• AutoFact: Putative polyprotein (Fragment) n=1 Tax=Cicer arietinum RepID=Q949K9_CICAR 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.866e-10
Putative Complete
sp_v3.0_unigene40458 SustainPine v3.0 1988
• AutoFact: RecName: Full=Putative pleiotropic drug resistance protein 7 emb|CAD59570.1| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj|BAD24998.1| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj|BAD25007.1| PDR-like ABC transporter [Oryza sati 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Putative N-terminus
sp_v3.0_unigene40461 SustainPine v3.0 650
• AutoFact: putative ABC transporter [Arabidopsis thaliana] 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Internal
sp_v3.0_unigene40544 SustainPine v3.0 2340
• AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene40608 SustainPine v3.0 1303
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.93e-15
Putative Complete
sp_v3.0_unigene40651 SustainPine v3.0 1097
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75KD0_ORYSJ 2.0e-22
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.817e-38
Putative N-terminus
sp_v3.0_unigene40777 SustainPine v3.0 1034
• AutoFact: Ran gtpase binding protein (Fragment) n=1 Tax=Oryza sativa Indica Group RepID=A6N0Y2_ORYSI 4.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ran GTPase binding protein, putative 1.462e-19
C-terminus
sp_v3.0_unigene40946 SustainPine v3.0 328
• AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 3.0e-27
• FL-Next: tr=Putative gag-pol polyprotein, identical; Solanum demissum (Wild potato). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain