Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin binding

Term: GO:0003682  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene163094 SustainPine v3.0 414
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.145e-13
Internal
sp_v3.0_unigene163108 SustainPine v3.0 389
AutoFact: PDR-type ABC transporter 9 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-binding cassette transporter, putative 0.0
Putative N-terminus
sp_v3.0_unigene163151 SustainPine v3.0 258
AutoFact: OSJNBa0085C10.25 protein n=1 Tax=Oryza sativa RepID=Q5JPW6_ORYSA 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene163316 SustainPine v3.0 341
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene163374 SustainPine v3.0 416
AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene163396 SustainPine v3.0 315
AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative plant disease resistance polyprotein 9.084e-08
Putative N-terminus
sp_v3.0_unigene163412 SustainPine v3.0 200
AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 2.0e-17
FL-Next: tr=Putative retroelement protein; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene163444 SustainPine v3.0 275
AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 2.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 0.0
Putative N-terminus
sp_v3.0_unigene163509 SustainPine v3.0 253
AutoFact: Os11g0224300 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0ITS1_ORYSJ 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene163519 SustainPine v3.0 278
AutoFact: RVT_1 domain containing protein 5.0e-16
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 0.0
Putative C-terminus
sp_v3.0_unigene163541 SustainPine v3.0 187
AutoFact: Gag-pol polyprotein n=3 Tax=Zea mays RepID=Q8L7J3_MAIZE 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gag-Pol polyprotein 4.454e-14
Putative C-terminus
sp_v3.0_unigene163546 SustainPine v3.0 173
AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVG4_9POAL 9.0e-10
FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Internal
sp_v3.0_unigene163637 SustainPine v3.0 260
AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 2.0e-10
FL-Next: tr=Pol protein; Cucumis melo subsp. melo. 0.0
Internal
sp_v3.0_unigene163640 SustainPine v3.0 208
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AUP9_ORYSJ 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative gag-pol polyprotein 4.733e-09
Internal
sp_v3.0_unigene163680 SustainPine v3.0 451
AutoFact: OSJNBa0059H15.7 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XXI2_ORYSJ 6.0e-30
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.451e-08
Putative Complete
sp_v3.0_unigene163697 SustainPine v3.0 310
AutoFact: RVT_2 domain containing protein 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyprotein, putative 1.765e-07
Internal
sp_v3.0_unigene163714 SustainPine v3.0 408
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 5.0e-32
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Polyprotein 1.91e-07
Putative Complete
sp_v3.0_unigene163861 SustainPine v3.0 410
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=2 Tax=Oryza sativa Japonica Group RepID=Q53M39_ORYSJ 5.0e-29
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.7e-13
Putative C-terminus
sp_v3.0_unigene163937 SustainPine v3.0 343
AutoFact: gag-pol [Zea mays] 7.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene163950 SustainPine v3.0 223
AutoFact: Unassigned protein 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain