Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin binding

Term: GO:0003682  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene159451 SustainPine v3.0 236
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene159535 SustainPine v3.0 430
• AutoFact: Putative gag-pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUF6_ORYSJ 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Internal
sp_v3.0_unigene159544 SustainPine v3.0 442
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 7.0e-28
• FL-Next: tr=Putative retroelement; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene159581 SustainPine v3.0 412
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY11_PICAB 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene159595 SustainPine v3.0 471
• AutoFact: OSJNBb0108J11.11 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XQY0_ORYSJ 7.0e-16
• FL-Next: tr=OSJNBb0108J11.11 protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene159602 SustainPine v3.0 301
• AutoFact: Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 5.755e-10
Internal
sp_v3.0_unigene159647 SustainPine v3.0 192
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q53NJ3_ORYSJ 8.0e-12
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.081e-24
Internal
sp_v3.0_unigene159694 SustainPine v3.0 419
• AutoFact: OSJNBb0072N21.12 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XWZ0_ORYSJ 3.0e-31
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Gag-pol polyprotein, putative 1.046e-07
C-terminus
sp_v3.0_unigene159749 SustainPine v3.0 364
• AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 1.292e-12
C-terminus
sp_v3.0_unigene159752 SustainPine v3.0 416
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.041e-09
Putative Complete
sp_v3.0_unigene159780 SustainPine v3.0 358
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y1L8_ORYSJ 5.0e-14
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.029e-06
Putative C-terminus
sp_v3.0_unigene159788 SustainPine v3.0 484
• AutoFact: Os09g0491900 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0J0N1_ORYSJ 9.0e-31
• FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
• Sma3: Gag-Pol polyprotein 1.254e-10
Internal
sp_v3.0_unigene159840 SustainPine v3.0 499
• AutoFact: Gag-pol polyprotein n=3 Tax=Zea mays RepID=Q8L7J3_MAIZE 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.085e-31
Putative Complete
sp_v3.0_unigene159844 SustainPine v3.0 427
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 4.0e-32
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 2.84464e-43
N-terminus
sp_v3.0_unigene159894 SustainPine v3.0 451
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-20
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene159940 SustainPine v3.0 491
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.521e-36
N-terminus
sp_v3.0_unigene159964 SustainPine v3.0 186
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 2.0e-24
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 1.766e-12
Internal
sp_v3.0_unigene160012 SustainPine v3.0 381
• AutoFact: OSJNBa0032F06.19 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XPW2_ORYSJ 3.0e-23
• FL-Next: tr=H0124B04.16 protein; Oryza sativa (Rice). 0.0
Internal
sp_v3.0_unigene160031 SustainPine v3.0 329
• AutoFact: OSJNBa0059D20.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XSK7_ORYSJ 1.0e-19
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
C-terminus
sp_v3.0_unigene160076 SustainPine v3.0 493
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AUP9_ORYSJ 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.11e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain