Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: chromatin

Term: GO:0000785  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene167226 SustainPine v3.0 218
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 5.0e-17
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene167341 SustainPine v3.0 197
• AutoFact: Chromatin-remodeling factor CHD3 n=5 Tax=Oryza sativa RepID=Q5SML0_ORYSJ 2.0e-06
• FL-Next: tr=Chromatin-remodeling factor CHD3; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene167370 SustainPine v3.0 239
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.289e-40
Putative Complete
sp_v3.0_unigene167374 SustainPine v3.0 134
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 2.0e-10
• FL-Next: tr=Gypsy/Ty3 element polyprotein, putative; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pol protein integrase region 9.863e-29
Internal
sp_v3.0_unigene167446 SustainPine v3.0 233
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 4.0e-19
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene167447 SustainPine v3.0 235
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-18
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Internal
sp_v3.0_unigene167713 SustainPine v3.0 227
• AutoFact: Os02g0712700 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0DY65_ORYSJ 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinase, putative 2.661e-29
Internal
sp_v3.0_unigene167736 SustainPine v3.0 194
• AutoFact: Os08g0133100 protein n=2 Tax=Oryza sativa RepID=Q0J867_ORYSJ 8.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.285e-08
Internal
sp_v3.0_unigene167908 SustainPine v3.0 300
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 4.0e-24
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 6.177e-38
Internal
sp_v3.0_unigene167916 SustainPine v3.0 324
• AutoFact: Putaive copia-like retrotransposon polyprotein, 5'-partial (Fragment) n=2 Tax=Oryza sativa RepID=Q8W5D1_ORYSA 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.34e-35
Internal
sp_v3.0_unigene167934 SustainPine v3.0 264
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=16 Tax=Magnoliophyta RepID=Q7XG23_ORYSJ 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Gag-Pol polyprotein 5.352e-08
Putative C-terminus
sp_v3.0_unigene167935 SustainPine v3.0 253
• AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella spiralis RepID=E5SB91_TRISP 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.202e-09
Internal
sp_v3.0_unigene167979 SustainPine v3.0 245
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 5.0e-15
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene167998 SustainPine v3.0 205
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 5.0e-22
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene168023 SustainPine v3.0 360
• AutoFact: Putative integrase (Fragment) n=7 Tax=Cucumis melo RepID=B0B0F4_CUCME 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.604e-10
Internal
sp_v3.0_unigene168068 SustainPine v3.0 147
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 2.0e-08
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Internal
sp_v3.0_unigene168177 SustainPine v3.0 228
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75HH6_ORYSJ 4.0e-17
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.14399e-43
Internal
sp_v3.0_unigene168296 SustainPine v3.0 118
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Morus bombycis RepID=Q9AVM8_9ROSA 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Reverse transcriptase 1.4013e-45
Internal
sp_v3.0_unigene172387 SustainPine v3.0 208
• AutoFact: Trypan_PARP multi-domain protein 3.0e-15
• Sma3: Glycine-rich cell wall structural protein 1, putative 2.096e-08
coding
sp_v3.0_unigene183452 SustainPine v3.0 597
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.833e-30
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain