Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin

Term: GO:0000785  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene161752 SustainPine v3.0 523
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2RB92_ORYSJ 2.0e-06
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene161753 SustainPine v3.0 356
• AutoFact: Putative polyprotein n=1 Tax=Zea mays RepID=Q8SA93_MAIZE 2.0e-38
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.127e-20
C-terminus
sp_v3.0_unigene161754 SustainPine v3.0 413
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=3 Tax=Oryza sativa RepID=Q10A24_ORYSJ 8.0e-22
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene161764 SustainPine v3.0 438
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 7.0e-35
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.151e-18
C-terminus
sp_v3.0_unigene161770 SustainPine v3.0 378
• AutoFact: Putative gag-pol polyprotein n=1 Tax=Petunia x hybrida RepID=Q6VPE8_PETHY 2.0e-24
• FL-Next: tr=Putative gag-pol polyprotein; Petunia hybrida (Petunia). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy sub-class 4.077e-10
Internal
sp_v3.0_unigene161772 SustainPine v3.0 403
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 2.112e-35
Internal
sp_v3.0_unigene161819 SustainPine v3.0 347
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SL06_ARATH 1.0e-18
• FL-Next: tr=Putative uncharacterized protein OSJNBa0042F15.18; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene161820 SustainPine v3.0 253
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 2.0e-22
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 7.698e-13
Putative C-terminus
sp_v3.0_unigene161870 SustainPine v3.0 406
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=5 Tax=Oryza sativa RepID=Q2R1L3_ORYSJ 2.0e-38
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative C-terminus
sp_v3.0_unigene161921 SustainPine v3.0 282
• AutoFact: Putative 22 kDa kafirin cluster; Ty3-Gypsy type n=2 Tax=Oryza sativa RepID=Q7G6A5_ORYSJ 2.0e-22
• FL-Next: tr=Putative 22 kDa kafirin cluster; Ty3-Gypsy type; Oryza sativa (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene161948 SustainPine v3.0 504
• AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 1.0e-32
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.825e-28
N-terminus
sp_v3.0_unigene161968 SustainPine v3.0 407
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 9.0e-23
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
Internal
sp_v3.0_unigene162112 SustainPine v3.0 309
• AutoFact: Reverse transcriptase (Fragment) n=16 Tax=Orobanche RepID=Q27TQ6_ORORA 3.0e-28
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Putative N-terminus
sp_v3.0_unigene162154 SustainPine v3.0 343
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene162225 SustainPine v3.0 308
• AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9T428_RICCO 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinase, putative 2.078e-29
Internal
sp_v3.0_unigene162249 SustainPine v3.0 224
• AutoFact: Os10g0317000 protein n=2 Tax=Oryza sativa RepID=Q7XFZ5_ORYSJ 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 4.021e-24
Putative Complete
sp_v3.0_unigene162252 SustainPine v3.0 296
• AutoFact: polyprotein [Glycine max] 1.0e-19
• FL-Next: tr=Disease resistance protein; pekinensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 4.516e-19
Internal
sp_v3.0_unigene162258 SustainPine v3.0 454
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 2.94273e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene162305 SustainPine v3.0 340
• AutoFact: Os07g0510800 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0D652_ORYSJ 8.0e-17
• FL-Next: tr=Retrotransposon protein, putative, unclassified, expressed; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene162321 SustainPine v3.0 347
• AutoFact: OSJNBa0091D06.8 protein n=1 Tax=Oryza sativa RepID=Q7XU13_ORYSA 1.0e-26
• FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Integrase 1.983e-06
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain