Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin

Term: GO:0000785  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene155133 SustainPine v3.0 419
AutoFact: Os01g0779300 protein n=2 Tax=Oryza sativa RepID=Q94DZ6_ORYSJ 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinase, putative 3.845e-17
C-terminus
sp_v3.0_unigene156488 SustainPine v3.0 363
AutoFact: Elongation factor EF-3 n=2 Tax=Chlamydomonadales RepID=A8ISZ1_CHLRE 5.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene158243 SustainPine v3.0 232
AutoFact: HAM group protein n=1 Tax=Dictyostelium discoideum RepID=B0G130_DICDI 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase 5.949e-25
Internal
sp_v3.0_unigene158591 SustainPine v3.0 356
AutoFact: Caltractin (Centrin), putative n=2 Tax=Sarcocystidae RepID=B9QDJ3_TOXGO 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Centrin 5.276e-35
Putative N-terminus
sp_v3.0_unigene159035 SustainPine v3.0 349
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Orobanche cernua var. cumana RepID=Q27U10_OROCE 8.0e-38
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 0.0
N-terminus
sp_v3.0_unigene159449 SustainPine v3.0 379
AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.574e-15
Putative C-terminus
sp_v3.0_unigene159451 SustainPine v3.0 236
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene159535 SustainPine v3.0 430
AutoFact: Putative gag-pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUF6_ORYSJ 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Internal
sp_v3.0_unigene159544 SustainPine v3.0 442
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 7.0e-28
FL-Next: tr=Putative retroelement; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene159581 SustainPine v3.0 412
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY11_PICAB 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene159595 SustainPine v3.0 471
AutoFact: OSJNBb0108J11.11 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XQY0_ORYSJ 7.0e-16
FL-Next: tr=OSJNBb0108J11.11 protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene159602 SustainPine v3.0 301
AutoFact: Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.755e-10
Internal
sp_v3.0_unigene159647 SustainPine v3.0 192
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q53NJ3_ORYSJ 8.0e-12
FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.081e-24
Internal
sp_v3.0_unigene159694 SustainPine v3.0 419
AutoFact: OSJNBb0072N21.12 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XWZ0_ORYSJ 3.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Gag-pol polyprotein, putative 1.046e-07
C-terminus
sp_v3.0_unigene159749 SustainPine v3.0 364
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gag-Pol polyprotein 1.292e-12
C-terminus
sp_v3.0_unigene159752 SustainPine v3.0 416
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.041e-09
Putative Complete
sp_v3.0_unigene159780 SustainPine v3.0 358
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y1L8_ORYSJ 5.0e-14
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.029e-06
Putative C-terminus
sp_v3.0_unigene159788 SustainPine v3.0 484
AutoFact: Os09g0491900 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0J0N1_ORYSJ 9.0e-31
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Sma3: Gag-Pol polyprotein 1.254e-10
Internal
sp_v3.0_unigene159840 SustainPine v3.0 499
AutoFact: Gag-pol polyprotein n=3 Tax=Zea mays RepID=Q8L7J3_MAIZE 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.085e-31
Putative Complete
sp_v3.0_unigene159844 SustainPine v3.0 427
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 4.0e-32
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 2.84464e-43
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain