Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin

Term: GO:0000785  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene149560 SustainPine v3.0 163
• AutoFact: Putative polyprotein n=1 Tax=Zea mays RepID=Q8SA93_MAIZE 5.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.28e-14
Internal
sp_v3.0_unigene149566 SustainPine v3.0 185
• AutoFact: FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis tha 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene149569 SustainPine v3.0 207
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 9.23456e-42
Internal
sp_v3.0_unigene149626 SustainPine v3.0 204
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.596e-20
Putative Complete
sp_v3.0_unigene149630 SustainPine v3.0 269
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 2.347e-30
Internal
sp_v3.0_unigene149670 SustainPine v3.0 320
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY11_PICAB 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.346e-27
Internal
sp_v3.0_unigene149681 SustainPine v3.0 311
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.529e-34
Internal
sp_v3.0_unigene149727 SustainPine v3.0 350
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Internal
sp_v3.0_unigene149730 SustainPine v3.0 302
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Abies alba RepID=Q9M6T0_ABIAL 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene149767 SustainPine v3.0 450
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 4.0e-37
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy sub-class; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.502e-22
Putative Complete
sp_v3.0_unigene149774 SustainPine v3.0 428
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 7.028e-13
Internal
sp_v3.0_unigene149803 SustainPine v3.0 283
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QPZ1_ORYSJ 6.0e-28
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy sub-class; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.308e-24
Putative C-terminus
sp_v3.0_unigene149831 SustainPine v3.0 455
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 1.0e-32
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Internal
sp_v3.0_unigene149920 SustainPine v3.0 146
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 1.0e-10
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene149924 SustainPine v3.0 216
• AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.781e-14
Internal
sp_v3.0_unigene149951 SustainPine v3.0 214
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 3.0e-15
• FL-Next: tr=Pol protein; Cucumis melo subsp. melo. 0.0
Internal
sp_v3.0_unigene150255 SustainPine v3.0 549
• AutoFact: Histone acetyltransferase ESA1 n=1 Tax=Gibberella zeae PH-1 RepID=ESA1_GIBZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone acetyltransferase 1.461e-15
C-terminus
sp_v3.0_unigene151659 SustainPine v3.0 169
• AutoFact: Polyprotein (Fragment) n=2 Tax=Musa acuminata subsp. malaccensis RepID=A8YPM5_MUSAC 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene153553 SustainPine v3.0 304
• AutoFact: PREDICTED: similar to TNP2 n=1 Tax=Vitis vinifera RepID=UPI00019854B7 9.0e-31
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class 1.826e-38
Internal
sp_v3.0_unigene153555 SustainPine v3.0 300
• AutoFact: Elongation factor EF-3 n=1 Tax=Ectocarpus siliculosus RepID=D7FW62_ECTSI 3.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain