Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: spermidine biosynthetic process

Term: GO:0008295  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene137357 SustainPine v3.0 261
• AutoFact: Spermidine synthase n=2 Tax=Papilionoideae RepID=A0EVX4_9FABA 2.0e-26
• FL-Next: tr=Putative spermidine synthase; Pinus sylvestris (Scots pine). 0.0
• Sma3: Spermidine synthase 0.0
Internal
sp_v3.0_unigene139733 SustainPine v3.0 434
• AutoFact: S-adenosylmethionine decarboxylase leader [Narcissus pseudonarcissus] 2.0e-13
• FL-Next: tr=Putative uncharacterized protein Sb02g025120; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
• Sma3: S-adenosylmethionine decarboxylase uORF 2.522e-09
Complete
sp_v3.0_unigene146552 SustainPine v3.0 556
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Daucus carota (Carrot). 0.0
• Sma3: S-adenosylmethionine decarboxylase 0.0
Internal
sp_v3.0_unigene146566 SustainPine v3.0 750
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
• Sma3: S-adenosylmethionine decarboxylase 0.0
Misassembled
sp_v3.0_unigene146589 SustainPine v3.0 525
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine decarboxylase 0.0
Putative N-terminus
sp_v3.0_unigene146594 SustainPine v3.0 493
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 8.0e-33
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
• Sma3: S-adenosylmethionine decarboxylase 0.0
Misassembled
sp_v3.0_unigene146624 SustainPine v3.0 353
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 1.0e-31
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Daucus carota (Carrot). 0.0
• Sma3: S-adenosylmethionine decarboxylase 1.671e-07
Internal
sp_v3.0_unigene146653 SustainPine v3.0 448
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
• Sma3: S-adenosylmethionine decarboxylase 0.0
Internal
sp_v3.0_unigene152185 SustainPine v3.0 433
• AutoFact: Spermidine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NH98_PHYIT 8.0e-38
• FL-Next: tr=Putative spermidine synthase; Pinus sylvestris (Scots pine). 0.0
• Sma3: Spermidine synthase 5.091e-20
Internal
sp_v3.0_unigene158255 SustainPine v3.0 278
• AutoFact: Spermidine synthase n=1 Tax=Polysphondylium pallidum RepID=D3BHT0_POLPA 5.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Spermidine synthase 0.0
Internal
sp_v3.0_unigene159125 SustainPine v3.0 136
• AutoFact: S-adenosylmethionine decarboxylase [Arabidopsis thaliana] ref|NP_001189972.1| S-adenosylmethionine decarboxylase [Arabidopsis thaliana] dbj|BAB01327.1| S-adenosylmethionine decarboxylase [Arabidopsis thaliana] gb|AAT06473.1| At3g25570 [Arabidopsis thalian 2.0e-11
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
• Sma3: S-adenosylmethionine decarboxylase proenzyme 7.13e-25
Internal
sp_v3.0_unigene159399 SustainPine v3.0 163
• AutoFact: PREDICTED: similar to Spermidine synthase (SPDSY) (Putrescine aminopropyltransferase), partial n=1 Tax=Ciona intestinalis RepID=UPI000180ADB0 1.0e-16
• FL-Next: tr=Putative spermidine synthase; Pinus sylvestris (Scots pine). 0.0
• Sma3: Spermidine synthase 0.0
Internal
sp_v3.0_unigene160486 SustainPine v3.0 411
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 6.0e-07
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
Putative N-terminus
sp_v3.0_unigene163685 SustainPine v3.0 318
• AutoFact: spermidine synthase [Lotus japonicus] 6.0e-26
• FL-Next: tr=Putative spermidine synthase; Pinus sylvestris (Scots pine). 0.0
• Sma3: Spermidine synthase 2.67648e-43
Internal
sp_v3.0_unigene165334 SustainPine v3.0 414
• AutoFact: Spermidine synthase n=4 Tax=Pleosporineae RepID=B2WIM7_PYRTR 0.0
• FL-Next: tr=Putative spermidine synthase; Pinus sylvestris (Scots pine). 0.0
• Sma3: Spermidine synthase 1.014e-10
C-terminus
sp_v3.0_unigene165981 SustainPine v3.0 486
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T961_PHYPA 9.0e-23
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine decarboxylase 9.213e-22
Putative C-terminus
sp_v3.0_unigene168327 SustainPine v3.0 125
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 5.0e-11
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-adenosylmethionine decarboxylase 9.94922e-44
Internal
sp_v3.0_unigene184989 SustainPine v3.0 880
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
• Sma3: S-adenosylmethionine decarboxylase 0.0
C-terminus
sp_v3.0_unigene205189 SustainPine v3.0 416
• AutoFact: Unassigned protein
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
C-terminus
sp_v3.0_unigene210366 SustainPine v3.0 499
• AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
• FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine). 0.0
• Sma3: S-adenosylmethionine decarboxylase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain